Literature DB >> 31189738

A Series of Fortunate Events: Introducing Chlamydomonas as a Reference Organism.

Patrice A Salomé1, Sabeeha S Merchant2,3.   

Abstract

The unicellular alga Chlamydomonas reinhardtii is a classical reference organism for studying photosynthesis, chloroplast biology, cell cycle control, and cilia structure and function. It is also an emerging model for studying sensory cilia, the production of high-value bioproducts, and in situ structural determination. Much of the early appeal of Chlamydomonas was rooted in its promise as a genetic system, but like other classic model organisms, this rise to prominence predated the discovery of the structure of DNA, whole-genome sequences, and molecular techniques for gene manipulation. The haploid genome of C. reinhardtii facilitates genetic analyses and offers many of the advantages of microbial systems applied to a photosynthetic organism. C. reinhardtii has contributed to our understanding of chloroplast-based photosynthesis and cilia biology. Despite pervasive transgene silencing, technological advances have allowed researchers to address outstanding lines of inquiry in algal research. The most thoroughly studied unicellular alga, C. reinhardtii, is the current standard for algal research, and although genome editing is still far from efficient and routine, it nevertheless serves as a template for other algae. We present a historical retrospective of the rise of C. reinhardtii to illuminate its past and present. We also present resources for current and future scientists who may wish to expand their studies to the realm of microalgae.
© 2019 American Society of Plant Biologists. All rights reserved.

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Year:  2019        PMID: 31189738      PMCID: PMC6713297          DOI: 10.1105/tpc.18.00952

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  226 in total

1.  In silico detection of control signals: mRNA 3'-end-processing sequences in diverse species.

Authors:  J H Graber; C R Cantor; S C Mohr; T F Smith
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

2.  Chlamydomonas reinhardtii genome project. A guide to the generation and use of the cDNA information.

Authors:  Jeff Shrager; Charles Hauser; Chiung-Wen Chang; Elizabeth H Harris; John Davies; Jeff McDermott; Raquel Tamse; Zhaodou Zhang; Arthur R Grossman
Journal:  Plant Physiol       Date:  2003-02       Impact factor: 8.340

3.  Early sexual origins of homeoprotein heterodimerization and evolution of the plant KNOX/BELL family.

Authors:  Jae-Hyeok Lee; Huawen Lin; Sunjoo Joo; Ursula Goodenough
Journal:  Cell       Date:  2008-05-30       Impact factor: 41.582

4.  Time-sequence of nuclear and chloroplast fusions in the zygote of Chlamydomonas reinhardii.

Authors:  R Blank; B Grobe; C G Arnold
Journal:  Planta       Date:  1978-01       Impact factor: 4.116

5.  Replication of chromosomal and cytoplasmic DNA during mitosis and meiosis in the eucaryote Chlamydomonas reinhardi.

Authors:  K S Chiang; N Sueoka
Journal:  J Cell Physiol       Date:  1967-10       Impact factor: 6.384

6.  An mt(+) gamete-specific nuclease that targets mt(-) chloroplasts during sexual reproduction in C. reinhardtii.

Authors:  Yoshiki Nishimura; Osami Misumi; Ko Kato; Noriko Inada; Tetsuya Higashiyama; Yu Momoyama; Tsuneyoshi Kuroiwa
Journal:  Genes Dev       Date:  2002-05-01       Impact factor: 11.361

7.  Genes for respiratory chain proteins and ribosomal RNAs are present on a 16-kilobase-pair DNA species from Chlamydomonas reinhardtii mitochondria.

Authors:  P H Boer; L Bonen; R W Lee; M W Gray
Journal:  Proc Natl Acad Sci U S A       Date:  1985-05       Impact factor: 11.205

8.  Complementation of a Chlamydomonas reinhardtii mutant using a genomic cosmid library.

Authors:  S Purton; J D Rochaix
Journal:  Plant Mol Biol       Date:  1994-02       Impact factor: 4.076

9.  ZFNGenome: a comprehensive resource for locating zinc finger nuclease target sites in model organisms.

Authors:  Deepak Reyon; Jessica R Kirkpatrick; Jeffry D Sander; Feng Zhang; Daniel F Voytas; J Keith Joung; Drena Dobbs; Clark R Coffman
Journal:  BMC Genomics       Date:  2011-01-28       Impact factor: 3.969

10.  Multiomics resolution of molecular events during a day in the life of Chlamydomonas.

Authors:  Daniela Strenkert; Stefan Schmollinger; Sean D Gallaher; Patrice A Salomé; Samuel O Purvine; Carrie D Nicora; Tabea Mettler-Altmann; Eric Soubeyrand; Andreas P M Weber; Mary S Lipton; Gilles J Basset; Sabeeha S Merchant
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-18       Impact factor: 11.205

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  40 in total

Review 1.  Diatom Molecular Research Comes of Age: Model Species for Studying Phytoplankton Biology and Diversity.

Authors:  Angela Falciatore; Marianne Jaubert; Jean-Pierre Bouly; Benjamin Bailleul; Thomas Mock
Journal:  Plant Cell       Date:  2019-12-18       Impact factor: 11.277

2.  Comparative genomics in Chlamydomonas: understanding the past, envisioning the future.

Authors:  Michela Osnato
Journal:  Plant Cell       Date:  2021-05-31       Impact factor: 11.277

3.  Pioneering algal recombineering.

Authors:  Robert C Augustine
Journal:  Plant Cell       Date:  2021-05-31       Impact factor: 11.277

4.  Global asymptotic stability of the active disassembly model of flagellar length control.

Authors:  Thomas G Fai; Youngmin Park
Journal:  J Math Biol       Date:  2021-12-30       Impact factor: 2.259

Review 5.  The regulatory activities of microRNAs in non-vascular plants: a mini review.

Authors:  Sujay Paul; Luis Alberto Bravo Vázquez; Marilyn Márquez Nafarrate; Ana Isabel Gutiérrez Reséndiz; Aashish Srivastava; Ashutosh Sharma
Journal:  Planta       Date:  2021-08-23       Impact factor: 4.116

Review 6.  From economy to luxury: Copper homeostasis in Chlamydomonas and other algae.

Authors:  Sabeeha S Merchant; Stefan Schmollinger; Daniela Strenkert; Jeffrey L Moseley; Crysten E Blaby-Haas
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2020-08-13       Impact factor: 4.739

7.  Single-cell visualization and quantification of trace metals in Chlamydomonas lysosome-related organelles.

Authors:  Stefan Schmollinger; Si Chen; Daniela Strenkert; Colleen Hui; Martina Ralle; Sabeeha S Merchant
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-20       Impact factor: 11.205

8.  Quantitative proteomic comparison of salt stress in Chlamydomonas reinhardtii and the snow alga Chlamydomonas nivalis reveals mechanisms for salt-triggered fatty acid accumulation via reallocation of carbon resources.

Authors:  E Hounslow; C A Evans; J Pandhal; T Sydney; N Couto; T K Pham; D James Gilmour; P C Wright
Journal:  Biotechnol Biofuels       Date:  2021-05-22       Impact factor: 6.040

9.  Two stones, one bird: co-targeting facilitates precise gene editing of non-selectable genes in Chlamydomonas.

Authors:  Frej Tulin
Journal:  Plant Physiol       Date:  2022-01-20       Impact factor: 8.340

10.  Comparative genomics of Chlamydomonas.

Authors:  Rory J Craig; Ahmed R Hasan; Rob W Ness; Peter D Keightley
Journal:  Plant Cell       Date:  2021-05-31       Impact factor: 12.085

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