lncRNA-NEF is downregulated in osteosarcoma and inhibits cancer cell migration and invasion by downregulating miRNA-21.

Long non-coding RNA (lncRNA)-NEF inhibits cancer metastasis in hepatocellular carcinoma; however, its role in other malignancies is unknown. The present study revealed that plasma lncRNA-NEF was downregulated, while miRNA-21 was upregulated in patients with osteosarcoma compared with healthy controls. Plasma lncRNA-NEF and miRNA-21 were negatively correlated in patients with osteosarcoma and healthy controls. Downregulation of lncRNA-NEF and upregulation of miRNA-21 distinguished patients with osteosarcoma from healthy controls. lncRNA-NEF overexpression mediated the inhibition of miRNA-21 expression in osteosarcoma cell lines, while miRNA-21 overexpression did not significantly affect the expression of lncRNA-NEF. lncRNA-NEF overexpression inhibited, while miRNA-21 overexpression promoted, migration and invasion of osteosarcoma cell lines in vitro. miRNA-21 overexpression partially compensated the inhibitory effects of lncRNA-NEF overexpression on osteosarcoma cell migration and invasion. Therefore, lncRNA-NEF may inhibit cancer cell migration and invasion in osteosarcoma by downregulating miRNA-21.

Introduction

Osteosarcoma is a rare type of malignancy which originates in bone and affects ~5 in 1,000,000 patients (1). In spite of the low incidence, osteosarcoma has a high mortality rate due to the high prevalence rate of metastases by the time of first diagnosis (2). Improved treatment strategies have increased the survival time of patients with osteosarcoma (3,4). However, the overall five-year survival rate of patients with this disease remains ~30% (5). The mechanisms underlying the pathogenesis of osteosarcoma have not been fully elucidated, potentially hindering the development of novel treatment strategies for this disease (6). Therefore, in-depth studies on the molecular mechanisms involved in osteosarcoma may improve its treatment.

In addition to protein-coding genes, the human genome contains a large number of genes which are transcribed to non-coding RNAs, including microRNAs (miRNAs) and long non-coding RNAs (lncRNAs) (7,8). miRNAs and lncRNAs participate in the regulation of cell growth, proliferation, differentiation, migration and invasion by interacting with a number of signaling pathways (7,8). Previous studies have revealed that non-coding RNAs serve key roles in a number of human diseases, including metabolic diseases, heart diseases and cancer (9,10). As an oncogenic miRNA, miRNA-21 promotes tumor development in different types of cancer, including osteosarcoma (11). miRNA-21 may participate in tumorigenesis through interactions with lncRNA (12). lncRNA neighboring enhancer of FOXA2 (lncRNA-NEF) is a recently identified tumor suppressor lncRNA which is involved in hepatocellular carcinoma (13). To the best of our knowledge, no studies investigating the interaction between lncRNA-NEF and miRNAs have been reported. The present study revealed that lncRNA-NEF may inhibit cancer cell migration and invasion in osteosarcoma by downregulating miRNA-21.

Materials and methods

Plasma specimens

Blood specimens (5 ml) were collected from 49 patients with osteosarcoma and 42 healthy volunteers who were admitted to Guangzhou General Hospital of Guangzhou Military Command (Guangzhou, China) between September 2015 and June 2018. Blood was placed in anticoagulation tubes and centrifuged at room temperature for 15 min at 2,000 × g to collect the plasma. The inclusion criteria of patients with osteosarcoma were as follows: i) Osteosarcoma was diagnosed by pathological examinations; ii) osteosarcoma stage I or II; iii) patients who were diagnosed and treated for the first time; and iv) patients who were willing to participate in the study. The exclusion criteria were as follows: i) Presence of co-morbidities; and ii) patients who were treated for other clinical disorders in the three months prior to admission. The patient group included 26 males and 23 females, with an age range of 12–33 years and a mean age of 19.3±4.2 years. The control group was composed of 23 males and 19 females, with an age range of 13–30 years and a mean age of 18.8±4.7 years. The two groups had similar gender and age distributions. Ethical approval was obtained from the Ethics Committee of Guangzhou General Hospital of Guangzhou Military Command. The study followed the tenets of the Declaration of Helsinki, and written informed consent was obtained from all patients and controls after the nature and possible consequences of the study were explained.

Cell culture

The human osteosarcoma cell lines MG-63 and U2OS were used in the current study. The two cell lines were purchased from the American Type Culture Collection (ATCC; Manassas, VA, USA). Eagle's Minimum Essential Medium (cat no. 30-2003; ATCC) supplemented with 10% heat-inactivated fetal bovine serum (FBS; Sangon Biotech Co., Ltd., Shanghai, China) was used to cultivate cells in an incubator (37°C, 5% CO2).

Reverse transcription-quantitative polymerase chain reaction (RT-qPCR)

Total RNA was extracted from plasma and cells using TRIzol® reagent (Invitrogen; Thermo Fisher Scientific, Inc., Waltham, MA, USA) and miRNAs were extracted from plasma and cells using the miRNeasy Mini kit (Qiagen GmBH, Hilden, Germany), according to the manufacturer's protocol. An Applied Biosystems™ High-Capacity cDNA Reverse Transcription kit (Applied Biosystems; Thermo Fisher Scientific, Inc.) and a miScript II RT kit (Qiagen GmBH) were used for reverse transcription. qScript One-Step RT-qPCR kit (Quanta Bisciences, Inc., Beverly, MA, USA) and mirVana qRT-PCR miRNA Detection kit (Thermo Fisher Scientific, Inc.) were used to perform qPCR reactions in an ABI 7500 System (Applied Biosystems; Theremo Fisher Scientific Inc.). The miRNA-21 primer pair was purchased from Sigma-Aldrich (cat. no. MIRAP00047; Merck KGaA, Darmstadt, Germany). The following primer pairs and the miRNA-21 primers were used for the qPCR: lncRNA-NEF forward, 5′-CTGCCGTCTTAAACCAACCC-3′ and reverse, 5′-GCCCAAACAGCTCCTCAATT-3′; β-actin forward, 5′-GACCTCTATGCCAACACAGT-3′ and reverse, 5′-AGTACTTGCGCTCAGGAGGA-3′; U6 forward, 5′-CTCGCTTCGGCAGCACA3′ and reverse, 5′-AACGCTTCACGAATTTGCGT-3′. The aforementioned primers were designed and synthesized by Shangai GenePharma Co., Ltd. (Shanghai, China). The following thermocycling conditions were used for the qPCR: Initial denaturation at 95°C for 55 sec, 40 cycles of 95°C for 22 sec and 60°C for 44 sec. mRNA levels were quantified using the 2−ΔΔCq method (14). miRNA-21 expression was normalized to U6, while lncRNA-NEF was normalized to β-actin.

Vectors, miRNAs and cell transfection

MISSION® microRNA Mimic hsa-miR-21* (cat no. HMI0372) and MISSION® miRNA, Negative Control 1 (cat no. HM0002) were purchased from Sigma-Aldrich; Merck KGaA. lncRNA-NEF expression pIRES vectors and empty pIRES vectors were purchased from Shanghai GenePharma Co., Ltd. lncRNA-NEF sequence refers to a previous study (13). Lipofectamine® 2000 (Invitrogen; Thermo Fisher Scientific, Inc.) was used to transfect 5×105 cells with miRNA (50 mM) and vectors (15 mM). Transfection was performed according to the manufacturer's protocol. Untransfected cells were used as control (C) cells. Cells transfected with MISSION® miRNA, Negative Control 1 or empty vectors were used as negative control (NC) cells. Transfection efficacy was determined by RT-qPCR. Cells were harvested 24 h following transfection for subsequent experimentation.

Transwell migration and invasion assay

Cell migration and invasion were quantified when lncRNA-NEF and miRNA overexpression rates reached 200–250% following 24 h transfection. Cultrex® 96-well cell migration/invasion chambers (8 µm) were purchased from Bio-Techne (Minneapolis, MN, USA). The assays were performed according to manufacturer's protocol. Briefly, serum-free Eagle's Minimum Essential Medium was used to prepare single cell suspensions (5×104 cells/ml). A total of 5×103 cells in 100 µl were transferred to the upper chamber of each well, and the lower chamber was filled with Eagle's Minimum Essential Medium supplemented with 20 % FBS. Cells were maintained in an incubator (37°C, 5% CO2) for 2 h. Membranes were subsequently stained with 0.5% crystal violet (Sigma-Aldrich; Merck KGaA) at 25°C for 20 min. The invasion assay was performed in the same way as the migration assay; however, the upper chamber was pre-coated with Matrigel (cat no. 356234; Millipore; Merck KGaA) at room temperature for 6 h prior to experimentation.

Statistical analysis

All experiments were repeated three times and data are presented as the mean ± standard deviation. All statistical analyses were performed using GraphPad Prism 6 software (GraphPad Software Inc., La Jolla, CA, USA). Correlations between plasma lncRNA-NEF and miRNA-21 were analyzed by Pearson's correlation test. Receiver operating characteristic (ROC) curve analysis was performed using patients with osteosarcoma as true positive cases and healthy controls as true negative cases. Comparisons between two groups were performed using the Student's t-test and comparisons among multiple groups were performed by a one-way analysis of variance followed by the Tukey test. P<0.05 was considered to indicate a statistically significant difference.

Results

Plasma levels of lncRNA-NEF and miRNA-21 are altered in patients with osteosarcoma compared with healthy controls

RT-qPCR results revealed that, compared with the healthy control group, plasma levels of lncRNA-NEF were significantly decreased in patients with osteosarcoma (P<0.05; Fig. 1A). By contrast, plasma levels of miRNA-21 were significantly increased in patients with osteosarcoma compared with healthy controls (P<0.05; Fig. 1B). These data suggest that lncRNA-NEF and miRNA-21 may be implicated in osteosarcoma.

Figure 1.

Plasma levels of lncRNA-NEF and miRNA-21 are altered in patients with osteosarcoma compared with healthy controls. (A) Plasma levels of lncRNA-NEF were significantly decreased in patients with osteosarcoma compared with healthy controls. (B) Plasma levels of miRNA-21 were significantly increased in patients with osteosarcoma compared with healthy controls. *P<0.05. miRNA, micro RNA; lncRNA, long non-coding RNA; NEF, neighboring enhancer of FOXA2.

Altered plasma levels of lncRNA-NEF and miRNA-21 distinguish patients with osteosarcoma from healthy controls

To evaluate the diagnostic value of lncRNA-NEF and miRNA-21 for osteosarcoma, ROC curve analysis was performed with patients with osteosarcoma as true positive cases and healthy controls as true negative cases. For plasma lncRNA-NEF, the area under the curve (AUC) was 0.9176, with a standard error of 0.02793 and 95% confidence interval (CI) of 0.8629–0.9724 (Fig. 2A). For plasma miRNA-21, the AUC was 0.9009, with a standard error of 0.02863 and 95% CI of 0.8457–0.9662 (Fig. 2B).

Figure 2.

Altered plasma levels of lncRNA-NEF and miRNA-21 distinguish patients with osteosarcoma from healthy controls. Receiver operating characteristic curve analysis revealed that (A) downregulation of lncRNA-NEF and (B) upregulation of miRNA-21 distinguished patients with osteosarcoma from healthy controls. miRNA, micro RNA; lncRNA, long non-coding RNA; NEF, neighboring enhancer of FOXA2.

Plasma lncRNA-NEF and miRNA-21 are significantly and reversely correlated in both patients with osteosarcoma and healthy controls

Correlations between plasma lncRNA-NEF and miRNA-21 in patients with osteosarcoma and healthy controls were analyzed by the Pearson's correlation test. Results revealed that plasma levels of lncRNA-NEF and miRNA-21 were significantly and reversely correlated in patients with osteosarcoma (P<0.05; Fig. 3A). In addition, a significantly reverse correlation between plasma levels of lncRNA-NEF and miRNA-21 was demonstrated in healthy controls (P<0.05; Fig. 3B).

Figure 3.

Plasma lncRNA-NEF and miRNA-21 are significantly and reversely correlated in patients with osteosarcoma and healthy controls. The Pearson's correlation test revealed that plasma lncRNA-NEF and miRNA-21 were significantly and reversely correlated in (A) patients with osteosarcoma and (B) healthy controls. miRNA, micro RNA; lncRNA, long non-coding RNA; NEF, neighboring enhancer of FOXA2.

lncRNA-NEF overexpression leads to inhibited miRNA-21 expression in two human osteosarcoma cell lines

The reverse correlation between plasma lncRNA-NEF and miRNA-21 suggests the possibility of interactions between them. To further explore these potential interactions, lncRNA-NEF expression vectors and miRNA-21 mimics were transfected into the human osteosarcoma cell lines MG-63 and U2OS. lncRNA-NEF and miRNA-21 expression was subsequently detected using RT-qPCR (Fig. 4). Compared with the C and NC groups, lncRNA-NEF overexpression significantly decreased expression of miRNA-21 in the two cell lines (P<0.05; Fig. 4A). By contrast, miRNA-21 overexpression resulted in no significant effects on the expression of lncRNA-NEF (P<0.05; Fig. 4B).

Figure 4.

lncRNA-NEF overexpression leads to inhibited miRNA-21 expression in the human osteosarcoma cell lines MG-63 and U2OS. (A) lncRNA-NEF overexpression led to significantly inhibited expression of miRNA-21 in MG-63 and U2OS cells. (B) miRNA-21 overexpression revealed no significant effects on the expression of lncRNA-NEF in MG-63 and U2OS cells. *P<0.05. miRNA, micro RNA; lncRNA, long non-coding RNA; C, control; NC, negative control; NEF, neighboring enhancer of FOXA2.

lncRNA-NEF overexpression inhibits migration of osteosarcoma cells, possibly through miRNA-21

Transwell migration and invasion assays were performed to investigate the effects of lncRNA-NEF and miRNA-21 overexpression on the migration and invasion abilities of MG-63 and U2OS human osteosarcoma cell lines. Compared with the C, control miRNA and empty vector groups, lncRNA-NEF overexpression significantly inhibited and miRNA-21 overexpression significantly promoted migration (P<0.05; Fig. 5A) and invasion (P<0.05; Fig. 5B) of MG-63 and U2OS human osteosarcoma cell lines. Compared with cells with lncRNA-NEF overexpression alone, cells with lncRNA-NEF and miRNA-21 overexpression exhibited significantly reduced migration (P<0.05; Fig. 5A) and invasion (P<0.05; Fig. 5B) abilities.

Figure 5.

lncRNA-NEF overexpression inhibits migration of the human osteosarcoma cell lines MG-63 and U2OS, possibly through miRNA-21. lncRNA-NEF overexpression significantly inhibited, while miRNA-21 overexpression significantly promoted (A) migration and (B) invasion of cells of MG-63 and U2OS cell lines. miRNA-21 overexpression attenuated the inhibitory effects of lncRNA-NEF overexpression on the migration and invasion of cancer cells. *P<0.05. miRNA, micro RNA; lncRNA, long non-coding RNA; C, control; NEF, neighboring enhancer of FOXA2.

Discussion

lncRNA-NEF is an oncogenic lncRNA which may inhibit epithelial to mesenchymal transition in hepatocellular carcinoma (13); however, its involvement in other human diseases is unknown. The present study revealed that lncRNA-NEF may inhibit cancer cell migration and invasion in osteosarcoma. These effects may be mediated by the downregulation of miRNA-21, a well-characterized oncogenic miRNA in cancer biology (11).

Treatment of osteosarcoma is challenged by the high prevalence rate of tumor metastasis by the time of diagnosis (2). Therefore, early diagnosis is required to improve patient outcomes. The current study enrolled patients with stage I and II osteosarcoma, which are early stages of osteosarcoma. Downregulation of lncRNA-NEF was previously observed in patients with hepatocellular carcinoma (13). The present study revealed significantly decreased plasma levels of lncRNA-NEF in patients with osteosarcoma compared with healthy controls. Downregulation of plasma lncRNA-NEF effectively distinguished patients with osteosarcoma from healthy controls, indicating that decreased levels of plasma lncRNA-NEF may have diagnostic value in the early detection of osteosarcoma. Subsequent in vitro experiments revealed that lncRNA-NEF may promote cancer cell invasion and migration in osteosarcoma. Therefore, the downregulation of lncRNA-NEF in patients with osteosarcoma may be used to predict tumor metastasis. lncRNA-NEF may serve as a therapeutic target for the prevention of tumor metastasis in osteosarcoma.

As an oncogenic miRNA, miRNA-21 is upregulated in different types of human malignancies, including osteosarcoma (15–17). Consistent with previous studies, the current study observed significantly upregulated plasma miRNA-21 in patients with osteosarcoma compared with healthy controls. Overexpression of miRNA-21 distinguished patients with osteosarcoma from healthy controls. However, altered expression of miRNA-21 has been observed in different types of cancer (11,15–17). Therefore, the diagnostic specificity of plasma miRNA-21 for osteosarcoma may be low.

The present study demonstrated a reverse correlation between plasma miRNA-21 and lncRNA-NEF in both patients with osteosarcoma and healthy controls. In vitro experiments using osteosarcoma cell lines revealed that lncRNA-NEF is a potential upstream inhibitor of miRNA-21 in the regulation of migration and invasion of osteosarcoma cells. lncRNA-NEF overexpression failed to significantly affect osteosarcoma cell proliferation (data not shown, revealed by Cell Counting Kit-8 assay). miRNA-21 has been previously reported to be involved in the regulation of cancer proliferation in osteosarcoma (17–19). Therefore, lncRNA-NEF may antagonize the effects of downregulation of miRNA-21 on cancer cell proliferation. The current study reported that lncRNA-NEF may interact with a miRNA to participate in cancer development.

In conclusion, lncRNA-NEF is downregulated and miRNA is upregulated in patients with osteosarcoma compared with healthy controls. lncRNA-NEF may inhibit cancer cell migration and invasion in osteosarcoma by downregulating miRNA-21.