| Literature DB >> 31183950 |
M Kirchner1, E Sayers1,2, S Cawthraw1, N Duggett1, R Gosling1, C Jenkins3, T J Dallman3, D Mueller-Doblies1, M F Anjum1.
Abstract
AIM: Shiga toxin-producing Escherichia coli (STEC) cause bloody diarrhoea, kidney failure and occasionally death. However, identifying the source of infection caused by STEC other than serogroup O157 is hampered by the availability of sensitive methods for detecting these pathogens. In this study, we developed novel tools for detecting E. coli O55 that is potentially associated with human outbreaks. METHODS ANDEntities:
Keywords: enterohaemorrhagic Escherichia coli; environmental; immuno-magentic separation; pathogen; rapid diagnostics
Mesh:
Substances:
Year: 2019 PMID: 31183950 PMCID: PMC6852171 DOI: 10.1111/jam.14345
Source DB: PubMed Journal: J Appl Microbiol ISSN: 1364-5072 Impact factor: 3.772
Details of O55 strains used in this study. The origin and year of isolation are unknown for B2884 as this is a type strain from the Staten Serum Institute collection (http://www.ssidiagnostica.com/da/Products/Bacterial-strains/E-coli)
| Strain ID | Year of isolation | Origin | Stx present | Serotype |
|---|---|---|---|---|
| B1362 | 2000 | Bovine | Negative | O55:K+:− |
| B2884 | Unknown | Unknown | Negative | O55:H− |
| 165/13 | 2013 | Bovine | Negative | O55:ND:ND |
| 394/10 | 2010 | Bovine | Negative | O55:ND:ND |
| 328/11 | 2011 | Bovine | Negative | O55:ND:ND |
| 329/11 | 2011 | Bovine | Negative | O55:ND:ND |
| 384/10 | 2010 | Bovine | Negative | O55:ND:ND |
| H1 | 2015 | Human | Positive | O55:H51 |
| H2 | 2016 | Human | Positive | O55:H7 |
| H3 | 2016 | Human | Positive | O55:H12 |
ND, not determined.
Figure 1Average percentage recovery of O55 strains post‐IMS with O55‐beads. Error bars indicate the calculate standard error from mean.
Figure 2Average percentage recovery of O22, O23, O83, O104 post‐IMS with O55‐beads at different initial cell concentrations ((a) 102 CFU per ml and (b) 103 CFU per ml). Error bars indicate the calculated standard error from mean.
Limit of detection for IMS‐culture and IMS‐PCR from spiked cattle faeces. The spiking concentration at which IMS‐culture or IMS‐PCR could detect O55. The results represent the average of triplicate experiments
| Enrichment time | Limit of detection (CFU per ml) | |
|---|---|---|
| IMS‐culture | IMS‐PCR | |
| O | 52 (range 1–90) | 52 (range 1–90) |
| 2 h | 54·4 (range 7·2–90) | 4·9 (range 1–7·2) |
Figure 3Tree generated using the SNP distance of core genomes from the isolates collected in this study (O55‐S17 and O55‐S20), Escherichia coli O55 available in BioProjects (NCBI), and O157:H7 strains (44‐APHA and 432299‐PHE) collected during a recent outbreak investigation on this farm, and representatives of O157:H7 lineages described elsewhere (SRR4788235, SRR1981384, SRR4195765) (Schutz et al. 2017). The E. coli K‐12 genome from MG1655 was used for reference.