Literature DB >> 3118046

Evolution from primordial oligomeric repeats to modern coding sequences.

S Ohno1.   

Abstract

It seems as though nature was most innovative at the very beginning of life on this Earth a few billion years ago. For example, the functional competence of most, if not all, of the sugar-metabolizing enzymes was clearly established before the division of eukaryotes from prokaryotes eons ago, each critical active-site amino acid sequence being conserved ever since by bacteria as well as by mammals. I contend that this initial innovativeness was due to the first set of coding sequences being repeats of base oligomers, thus encoding polypeptide chains of various periodicities; such periodical polypeptide chains can easily acquire alpha-helical and beta-sheet-forming segments. In fact, the entire length of sugar-metabolizing enzymes is comprised of alternating alpha-helical and beta-sheet-forming segments. In the prebiotic (therefore nonenzymatic) replication of nucleic acids, what was in short supply was long templates, for there apparently was no inherent obstacle in copying of long templates, if such existed, in the presence of Zn2+. I submit that in this prebiotic condition, only those nucleotide oligomers that were internal doubles were automatically assured of progressive elongation to become long templates. For example, a decamer that was a pentameric repeat and its complementary sequence may pair unequally to initiate the next round of replication: first unit pairing with second, and a paired segment serving as a primer. As a consequence of this unequal pairing, decameric templates managed to become pentadecameric templates only after one round of replication, and this elongation process had no inherent limit.

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Year:  1987        PMID: 3118046     DOI: 10.1007/bf02603117

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  10 in total

1.  6-Aminohexanoic acid cyclic dimer hydrolase. A new cyclic amide hydrolase produced by Achromobacter guttatus KI74.

Authors:  S Kinoshita; S Negoro; M Muramatsu; V S Bisaria; S Sawada; H Okada
Journal:  Eur J Biochem       Date:  1977-11-01

2.  Evolutionary adaptation of plasmid-encoded enzymes for degrading nylon oligomers.

Authors:  H Okada; S Negoro; H Kimura; S Nakamura
Journal:  Nature       Date:  1983 Nov 10-16       Impact factor: 49.962

3.  Does Q beta replicase synthesize RNA in the absence of template?

Authors:  D Hill; T Blumenthal
Journal:  Nature       Date:  1983-01-27       Impact factor: 49.962

4.  Catalysis of accurate poly(C)-directed synthesis of 3'-5'-linked oligoguanylates by Zn2+.

Authors:  P K Bridson; L E Orgel
Journal:  J Mol Biol       Date:  1980-12-25       Impact factor: 5.469

5.  On earlier states of the biochemical system.

Authors:  M Ycas
Journal:  J Theor Biol       Date:  1974-03       Impact factor: 2.691

6.  Birth of a unique enzyme from an alternative reading frame of the preexisted, internally repetitious coding sequence.

Authors:  S Ohno
Journal:  Proc Natl Acad Sci U S A       Date:  1984-04       Impact factor: 11.205

7.  The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle.

Authors:  M Eigen; P Schuster
Journal:  Naturwissenschaften       Date:  1977-11

8.  Purification and characterization of 6-aminohexanoic-acid-oligomer hydrolase of Flavobacterium sp. Ki72.

Authors:  S Kinoshita; T Terada; T Taniguchi; Y Takene; S Masuda; N Matsunaga; H Okada
Journal:  Eur J Biochem       Date:  1981-06-01

9.  Generation of antibody diversity in the immune response of BALB/c mice to influenza virus hemagglutinin.

Authors:  D McKean; K Huppi; M Bell; L Staudt; W Gerhard; M Weigert
Journal:  Proc Natl Acad Sci U S A       Date:  1984-05       Impact factor: 11.205

  10 in total
  12 in total

1.  Elongation of repetitive DNA by DNA polymerase from a hyperthermophilic bacterium Thermus thermophilus.

Authors:  N Ogata; H Morino
Journal:  Nucleic Acids Res       Date:  2000-10-15       Impact factor: 16.971

2.  Essential role of duplications of short motif sequences in the genomic evolution of Bombyx mori.

Authors:  S Ichimura; K Mita
Journal:  J Mol Evol       Date:  1992-08       Impact factor: 2.395

3.  Equal G and C contents in histone genes indicate selection pressures on mRNA secondary structure.

Authors:  M A Huynen; D A Konings; P Hogeweg
Journal:  J Mol Evol       Date:  1992-04       Impact factor: 2.395

4.  Unique genes in giant viruses: regular substitution pattern and anomalously short size.

Authors:  Hiroyuki Ogata; Jean-Michel Claverie
Journal:  Genome Res       Date:  2007-07-25       Impact factor: 9.043

5.  Kinetics and thermodynamics of the microgene polymerization reaction.

Authors:  Yechiel Shai
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

6.  Kinetics of repeat propagation in the microgene polymerization reaction.

Authors:  Mark Itsko; Avinoam Rabinovitch; Arieh Zaritsky
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

7.  On primordial sense-antisense coding.

Authors:  Andrei S Rodin; Sergei N Rodin; Charles W Carter
Journal:  J Mol Evol       Date:  2009-12-03       Impact factor: 2.395

8.  On concerted origin of transfer RNAs with complementary anticodons.

Authors:  S Rodin; S Ohno; A Rodin
Journal:  Orig Life Evol Biosph       Date:  1993-12       Impact factor: 1.950

9.  Creation of libraries with long ORFs by polymerization of a microgene.

Authors:  K Shiba; Y Takahashi; T Noda
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-15       Impact factor: 11.205

10.  An experimental approach to testing modular evolution: directed replacement of alpha-helices in a bacterial protein.

Authors:  R F DuBose; D L Hartl
Journal:  Proc Natl Acad Sci U S A       Date:  1989-12       Impact factor: 11.205

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