Literature DB >> 31179448

Left Ventricle Segmentation and Quantification from Cardiac Cine MR Images via Multi-task Learning.

Shusil Dangi1, Ziv Yaniv2,3, Cristian A Linte1,4.   

Abstract

Segmentation of the left ventricle and quantification of various cardiac contractile functions is crucial for the timely diagnosis and treatment of cardiovascular diseases. Traditionally, the two tasks have been tackled independently. Here we propose a convolutional neural network based multi-task learning approach to perform both tasks simultaneously, such that, the network learns better representation of the data with improved generalization performance. Probabilistic formulation of the problem enables learning the task uncertainties during the training, which are used to automatically compute the weights for the tasks. We performed a five fold cross-validation of the myocardium segmentation obtained from the proposed multi-task network on 97 patient 4-dimensional cardiac cine-MRI datasets available through the STA-COM LV segmentation challenge against the provided gold-standard myocardium segmentation, obtaining a Dice overlap of 0.849 ± 0.036 and mean surface distance of 0.274 ± 0.083 mm, while simultaneously estimating the myocardial area with mean absolute difference error of 205 ± 198 mm2.

Entities:  

Year:  2019        PMID: 31179448      PMCID: PMC6554510     

Source DB:  PubMed          Journal:  Stat Atlases Comput Models Heart


  9 in total

Review 1.  Deep learning.

Authors:  Yann LeCun; Yoshua Bengio; Geoffrey Hinton
Journal:  Nature       Date:  2015-05-28       Impact factor: 49.962

Review 2.  A survey on deep learning in medical image analysis.

Authors:  Geert Litjens; Thijs Kooi; Babak Ehteshami Bejnordi; Arnaud Arindra Adiyoso Setio; Francesco Ciompi; Mohsen Ghafoorian; Jeroen A W M van der Laak; Bram van Ginneken; Clara I Sánchez
Journal:  Med Image Anal       Date:  2017-07-26       Impact factor: 8.545

3.  Direct Multitype Cardiac Indices Estimation via Joint Representation and Regression Learning.

Authors:  Wufeng Xue; Ali Islam; Mousumi Bhaduri; Shuo Li
Journal:  IEEE Trans Med Imaging       Date:  2017-05-26       Impact factor: 10.048

4.  Full left ventricle quantification via deep multitask relationships learning.

Authors:  Wufeng Xue; Gary Brahm; Sachin Pandey; Stephanie Leung; Shuo Li
Journal:  Med Image Anal       Date:  2017-09-28       Impact factor: 8.545

Review 5.  A review of segmentation methods in short axis cardiac MR images.

Authors:  Caroline Petitjean; Jean-Nicolas Dacher
Journal:  Med Image Anal       Date:  2010-12-24       Impact factor: 8.545

Review 6.  Deep Learning in Medical Image Analysis.

Authors:  Dinggang Shen; Guorong Wu; Heung-Il Suk
Journal:  Annu Rev Biomed Eng       Date:  2017-03-09       Impact factor: 9.590

7.  A collaborative resource to build consensus for automated left ventricular segmentation of cardiac MR images.

Authors:  Avan Suinesiaputra; Brett R Cowan; Ahmed O Al-Agamy; Mustafa A Elattar; Nicholas Ayache; Ahmed S Fahmy; Ayman M Khalifa; Pau Medrano-Gracia; Marie-Pierre Jolly; Alan H Kadish; Daniel C Lee; Ján Margeta; Simon K Warfield; Alistair A Young
Journal:  Med Image Anal       Date:  2013-09-13       Impact factor: 8.545

8.  The Cardiac Atlas Project--an imaging database for computational modeling and statistical atlases of the heart.

Authors:  Carissa G Fonseca; Michael Backhaus; David A Bluemke; Randall D Britten; Jae Do Chung; Brett R Cowan; Ivo D Dinov; J Paul Finn; Peter J Hunter; Alan H Kadish; Daniel C Lee; Joao A C Lima; Pau Medrano-Gracia; Kalyanam Shivkumar; Avan Suinesiaputra; Wenchao Tao; Alistair A Young
Journal:  Bioinformatics       Date:  2011-07-06       Impact factor: 6.937

9.  SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research.

Authors:  Ziv Yaniv; Bradley C Lowekamp; Hans J Johnson; Richard Beare
Journal:  J Digit Imaging       Date:  2018-06       Impact factor: 4.056

  9 in total
  3 in total

1.  Deep learning based fully automatic segmentation of the left ventricular endocardium and epicardium from cardiac cine MRI.

Authors:  Yan Wang; Yue Zhang; Zhaoying Wen; Bing Tian; Evan Kao; Xinke Liu; Wanling Xuan; Karen Ordovas; David Saloner; Jing Liu
Journal:  Quant Imaging Med Surg       Date:  2021-04

2.  Automatic Left Ventricle Segmentation from Short-Axis Cardiac MRI Images Based on Fully Convolutional Neural Network.

Authors:  Zakarya Farea Shaaf; Muhammad Mahadi Abdul Jamil; Radzi Ambar; Ahmed Abdu Alattab; Anwar Ali Yahya; Yousef Asiri
Journal:  Diagnostics (Basel)       Date:  2022-02-05

3.  Ensemble machine learning approach for screening of coronary heart disease based on echocardiography and risk factors.

Authors:  Jingyi Zhang; Huolan Zhu; Yongkai Chen; Chenguang Yang; Huimin Cheng; Yi Li; Wenxuan Zhong; Fang Wang
Journal:  BMC Med Inform Decis Mak       Date:  2021-06-11       Impact factor: 2.796

  3 in total

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