| Literature DB >> 31175274 |
Burook Misganaw1, Guia Guffanti2, Adriana Lori3, Duna Abu-Amara4, Janine D Flory5,6, Susanne Mueller7,8, Rachel Yehuda5,6, Marti Jett9, Charles R Marmar4, Kerry J Ressler2, Francis J Doyle10.
Abstract
Post-traumatic stress disorder (PTSD) is a psychiatric illness with a highly polygenic architecture without large effect-size common single-nucleotide polymorphisms (SNPs). Thus, to capture a substantial portion of the genetic contribution, effects from many variants need to be aggregated. We investigated various aspects of one such approach that has been successfully applied to many traits, polygenic risk score (PRS) for PTSD. Theoretical analyses indicate the potential prediction ability of PRS. We used the latest summary statistics from the largest published genome-wide association study (GWAS) conducted by Psychiatric Genomics Consortium for PTSD (PGC-PTSD). We found that the PRS constructed for a cohort comprising veterans of recent wars (n = 244) explains a considerable proportion of PTSD onset (Nagelkerke R2 = 4.68%, P = 0.003) and severity (R2 = 4.35%, P = 0.0008) variances. However, the performance on an African ancestry sub-cohort was minimal. A PRS constructed with schizophrenia GWAS also explained a significant fraction of PTSD diagnosis variance (Nagelkerke R2 = 2.96%, P = 0.0175), confirming previously reported genetic correlation between the two psychiatric ailments. Overall, these findings demonstrate the important role polygenic analyses of PTSD will play in risk prediction models as well as in elucidating the biology of the disorder.Entities:
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Year: 2019 PMID: 31175274 PMCID: PMC6555815 DOI: 10.1038/s41398-019-0497-3
Source DB: PubMed Journal: Transl Psychiatry ISSN: 2158-3188 Impact factor: 6.222
Sample characteristics by PTSD status of SysBio cohort included in this study
| PTSD cases ( | Healthy controls ( | ||
|---|---|---|---|
| CAPS cur | 2.00 (0.00, 6.00) | 65.50 (51.75, 80.25) | <0.001 |
| CAPS LT | 8.00 (3.00, 15.00) | 90.00 (77.75, 101.00) | <0.001 |
| Female | 14% (18) | 14% (16) | 0.952 |
| BMI | 27.35 (24.45, 29.85) | 28.25 (25.61, 32.28) | 0.028 |
| Age | 30.00 (27.75, 37.00) | 31.00 (28.75, 36.25) | 0.338 |
|
| |||
| Asian | 7% (9) | 3% (3) | |
| Black | 23% (30) | 29% (34) | |
| Hispanic | 28% (36) | 42% (49) | 0.026 |
| White | 38% (49) | 24% (28) | |
| Other | 3% (4) | 2% (2) | |
|
| |||
| 1 | 2% (3) | 3% (4) | |
| 2 | 20% (26) | 35% (41) | |
| 3 | 24% (31) | 30% (35) | 0.009 |
| 4 | 35% (45) | 25% (29) | |
| 5 | 17% (22) | 6% (7) | |
| 6 | 1% (1) | 0% (0) | |
| BDI | 3.00 (0.00, 9.25) | 24.00 (16.50, 31.00) | <0.001 |
CAPS, Clinician Administered PTSD Scale (cur: current and LT: Life-Time); BMI, Body Mass Index; BDI, Beck Depression Inventory II total score (n = 239)
For continuous variables, Q2 (Q1, Q3) represent the median, the lower quartile, and the upper quartile, respectively. For categorical variables, percentages (and frequencies) are shown. Wilcoxon rank sum test for continuous variables and Pearson χ2 test for categorical variables are used. Education levels: 1, Up to 12th grade; 2, H.S. Diploma or GED; 3, 2 yrs. college A.A. Degree; 4, 4 yrs. College Bachelor’s Degree; 5, Masters Degree; 6, Doctoral Degree
Fig. 1Performance projections and upper bound of a genomic predictor for PTSD onset.
Assuming 50,000 non-null contributing markers, coefficient of determination (fraction of variance explained) and corresponding AUC’s of genomic profiles built on finite number of samples are plotted in blue and red, respectively
Fig. 2PTSD onset and PTSD severity and stratification into risk groups with PRS.
The first (lowest) quintile is used as a reference. For every other quintile, the mean difference in CAPS (or the odds ratio of PTSD onset) from the first quintile is plotted (corresponding to the dot in the plot). The bars indicate 95% confidence intervals around the mean differences (or odds ratios)