Literature DB >> 31172134

Exploratory Population Analysis with Unbalanced Optimal Transport.

Samuel Gerber1, Marc Niethammer2, Martin Styner2, Stephen Aylward1.   

Abstract

The plethora of data from neuroimaging studies provide a rich opportunity to discover effects and generate hypotheses through exploratory data analysis. Brain pathologies often manifest in changes in shape along with deterioration and alteration of brain matter, i.e., changes in mass. We propose a morphometry approach using unbalanced optimal transport that detects and localizes changes in mass and separates them from changes due to the location of mass. The approach generates images of mass allocation and mass transport cost for each subject in the population. Voxelwise correlations with clinical variables highlight regions of mass allocation or mass transfer related to the variables. We demonstrate the method on the white and gray matter segmentations from the OASIS brain MRI data set. The separation of white and gray matter ensures that optimal transport does not transfer mass between different tissues types and separates gray and white matter related changes. The OASIS data set includes subjects ranging from healthy to mild and moderate dementia, and the results corroborate known pathology changes related to dementia that are not discovered with traditional voxel-based morphometry. The transport-based morphometry increases the explanatory power of regression on clinical variables compared to traditional voxel-based morphometry, indicating that transport cost and mass allocation images capture a larger portion of pathology induced changes.

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Mesh:

Year:  2018        PMID: 31172134      PMCID: PMC6547365          DOI: 10.1007/978-3-030-00931-1_53

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  7 in total

Review 1.  Voxel-based morphometry--the methods.

Authors:  J Ashburner; K J Friston
Journal:  Neuroimage       Date:  2000-06       Impact factor: 6.556

2.  "Voxel-based morphometry" should not be used with imperfectly registered images.

Authors:  F L Bookstein
Journal:  Neuroimage       Date:  2001-12       Impact factor: 6.556

3.  Why voxel-based morphometric analysis should be used with great caution when characterizing group differences.

Authors:  Christos Davatzikos
Journal:  Neuroimage       Date:  2004-09       Impact factor: 6.556

4.  Identifying global anatomical differences: deformation-based morphometry.

Authors:  J Ashburner; C Hutton; R Frackowiak; I Johnsrude; C Price; K Friston
Journal:  Hum Brain Mapp       Date:  1998       Impact factor: 5.038

5.  Discovery and visualization of structural biomarkers from MRI using transport-based morphometry.

Authors:  Shinjini Kundu; Soheil Kolouri; Kirk I Erickson; Arthur F Kramer; Edward McAuley; Gustavo K Rohde
Journal:  Neuroimage       Date:  2017-11-05       Impact factor: 6.556

6.  Open access series of imaging studies: longitudinal MRI data in nondemented and demented older adults.

Authors:  Daniel S Marcus; Anthony F Fotenos; John G Csernansky; John C Morris; Randy L Buckner
Journal:  J Cogn Neurosci       Date:  2010-12       Impact factor: 3.225

7.  Fast Optimal Transport Averaging of Neuroimaging Data.

Authors:  A Gramfort; G Peyré; M Cuturi
Journal:  Inf Process Med Imaging       Date:  2015
  7 in total
  2 in total

1.  Fisher-Rao Regularized Transport Analysis of the Glymphatic System and Waste Drainage.

Authors:  Rena Elkin; Saad Nadeem; Hedok Lee; Helene Benveniste; Allen Tannenbaum
Journal:  Med Image Comput Comput Assist Interv       Date:  2020-09-29

2.  Computing Univariate Neurodegenerative Biomarkers with Volumetric Optimal Transportation: A Pilot Study.

Authors:  Yanshuai Tu; Liang Mi; Wen Zhang; Haomeng Zhang; Junwei Zhang; Yonghui Fan; Dhruman Goradia; Kewei Chen; Richard J Caselli; Eric M Reiman; Xianfeng Gu; Yalin Wang
Journal:  Neuroinformatics       Date:  2020-10
  2 in total

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