| Literature DB >> 31171892 |
Hui-Hong Jiang1, Zhi-Yong Zhang2, Xiao-Yan Wang3, Xuan Tang1, Hai-Long Liu1, Ai-Li Wang4, Hua-Guang Li4, Er-Jiang Tang4, Mou-Bin Lin1.
Abstract
BACKGROUND: Lymphovascular invasion (LVI) is suggested to be an early and important step in tumor progression toward metastasis, but its prognostic value and genetic mechanisms in colorectal cancer (CRC) have not been well investigated. AIM: To investigate the prognostic value of LVI in CRC and identify the associated genomic alterations.Entities:
Keywords: Colorectal cancer; DNA copy number aberration; Functional analysis; Lymphovascular invasion; Prognostic
Year: 2019 PMID: 31171892 PMCID: PMC6543237 DOI: 10.3748/wjg.v25.i20.2489
Source DB: PubMed Journal: World J Gastroenterol ISSN: 1007-9327 Impact factor: 5.742
Comparison of characteristics between colorectal cancer patients with and without lymphovascular invasion
| Male | 93 (62.0) | 621 (58.1) | |
| Female | 57 (38.0) | 448 (41.9) | 0.377 |
| ≤ 65 | 87 (58.0) | 629 (58.8) | |
| > 65 | 63 (42.0) | 440 (41.2) | 0.860 |
| Colon | 72 (48.0) | 497 (46.5) | |
| Rectum | 78 (52.0) | 572 (53.5) | 0.793 |
| Well/moderately | 79 (52.7) | 815 (76.2) | |
| Poorly/mucinous | 71 (47.3) | 254 (23.8) | < 0.001 |
| I | 12 (8.0) | 207 (19.4) | |
| II | 30 (20.0) | 368 (34.4) | |
| III | 64 (42.7) | 358 (33.5) | |
| IV | 44 (29.3) | 136 (12.7) | < 0.001 |
LVI: Lymphovascular invasion; TNM: Tumor-node-metastasis.
Multivariate Cox analysis for 5-year overall survival in 1219 colorectal cancer patients
| Male | 1 (Reference) | |
| Female | 0.93 (0.77-1.13) | 0.481 |
| ≤ 65 | 1 (Reference) | |
| > 65 | 1.93 (1.60-2.33) | < 0.001 |
| Colon | 1 (Reference) | |
| Rectum | 0.94 (0.78-1.13) | 0.497 |
| Well/moderately | 1 (Reference) | |
| Poorly/mucinous | 1.51 (1.24-1.85) | < 0.001 |
| I | 1 (Reference) | |
| II | 1.63 (1.07-2.47) | 0.022 |
| III | 3.31 (2.24-4.90) | < 0.001 |
| IV | 11.88 (7.94-17.77) | < 0.001 |
| Negative | 1 (Reference) | |
| Positive | 1.77 (1.40-2.25) | < 0.001 |
HR: Hazard ratio; CI: Confidence interval; TNM: Tumor-node-metastasis; LVI: Lymphovascular invasion.
Figure 1Kaplan-Meier curve for 5-year overall survival according to LVI status. The 5-year overall survival rate of LVI group was significantly lower than that of non-LVI group (36.0% vs 66.8%, log-rank P < 0.001). LVI: Lymphovascular invasion.
Figure 2Comparison of DNA copy number alterations between colorectal cancers with and without LVI. Data were shown for the autosomes only. Blue represents gain of expression; red represents loss of expression. One hundred eighty-four DNA copy number alterations (105 gains and 79 losses) exhibited a significant difference in their frequencies between the two groups (P < 0.05). DCNA: DNA copy number alteration; LVI: Lymphovascular invasion.
Figure 3DCNA classifier for differentiating between colorectal cancers with and without LVI. LVI were distinguished from those without it at a 95.7% accuracy rate by examining seven special DCNAs. The procedures of this analysis were as follows: chr6: 95148725-95193920 was taken as the first criterion. If a tumor showed gain at chr6: 95148725-95193920, it was categorized as a tumor with LVI. Six of 47 tumors were classified into this group. When the DCNA of the tumor was not this case, the second criterion (Loss at chr17: 30770711-30859316) was examined. Five tumors were separated from the remaining 41 tumors at this point. If the tumors showed no loss at chr17: 30770711-30859316, then the third criterion (Gain at chr14: 106113380-106135655) was checked. In this way, the DCNA of the tumor was in turn examined from the 1st to the 7th one. Each step successively sorted a cluster of either group. Finally, all colorectal cancers were divided into either of two groups, tumors with and without LVI. DCNA: DNA copy number alteration; LVI: Lymphovascular invasion.
Figure 4Top GO terms enriched by the 1784 genes located at the 184 significant DNA copy number alterations. aP < 0.05; GO: Gene ontology.
Figure 5Top Kyoto Encyclopedia of Genes and Genomes pathway terms enriched by the 1784 genes located at the 184 significant DNA copy number alterations.
Figure 6Protein‑protein interaction network for the genes related to lymphovascular invasion (confidence score > 0.95). Blue represents gain of expression; red represents loss of expression. Diamonds represent the 31 hug genes identified by closeness, degree, and eigenvector.
Top 20 hub genes ranked by closeness, degree, and eigenvector
| 1 | EP300 | 0.256684 | EP300 | 15 | EP300 | 0.481394 |
| 2 | NOTCH1 | 0.241814 | PES1 | 11 | ESR1 | 0.320964 |
| 3 | ESR1 | 0.240000 | ESR1 | 10 | STAT5A | 0.297293 |
| 4 | AKT1 | 0.227488 | MAPK1 | 8 | STAT3 | 0.285113 |
| 5 | DVL1 | 0.225352 | AKT1 | 8 | MAPK1 | 0.269273 |
| 6 | STAT5A | 0.223776 | BRCA1 | 7 | STAT5B | 0.240224 |
| 7 | MED1 | 0.219680 | NHP2L1 | 7 | AKT1 | 0.221299 |
| 8 | STAT3 | 0.213808 | STAT5A | 6 | MED1 | 0.202291 |
| 9 | STAT5B | 0.213333 | MED1 | 6 | PPARA | 0.169136 |
| 10 | SIRT1 | 0.212860 | STAT3 | 6 | BCR | 0.166509 |
| 11 | PPARA | 0.210526 | CIRH1A | 6 | HDAC2 | 0.164826 |
| 12 | HDAC2 | 0.209607 | SNRPD3 | 6 | IL2RB | 0.151029 |
| 13 | ARNT | 0.209607 | RPL3 | 6 | KAT2A | 0.139521 |
| 14 | CSNK1E | 0.209150 | STAT5B | 5 | HDAC10 | 0.139521 |
| 15 | HDAC10 | 0.206452 | BCR | 5 | SIRT1 | 0.137321 |
| 16 | KAT2A | 0.206452 | SIRT1 | 5 | ARNT | 0.124740 |
| 17 | MYB | 0.204691 | HDAC2 | 5 | RPS6KB1 | 0.105985 |
| 18 | CITED2 | 0.204691 | CDH1 | 5 | NOTCH1 | 0.094497 |
| 19 | IGF1R | 0.204255 | SNRPA1 | 5 | IGF1R | 0.087082 |
| 20 | MAPK1 | 0.202105 | RPS6KB1 | 4 | MYB | 0.085425 |