| Literature DB >> 31168300 |
Yiqian Liang1,2, Peng Han3, Ting Wang4, Hui Ren1, Lei Gao5, Puyu Shi1, Shuo Zhang6, Aimin Yang2, Zheng Li7, Mingwei Chen1.
Abstract
BACKGROUND: Lung cancer is the leading cause of cancer death in China and around the world. Early detection is key to improving the survival rate of non-small cell lung cancer (NSCLC). Alteration in glycosylation has been observed in cancers, and glycans can be a source for the development of new biomarkers for NSCLC.Entities:
Keywords: Glycomics; Lectin microarray; Non-small cell lung cancer; Protein glycosylation; Serum biomarkers
Year: 2019 PMID: 31168300 PMCID: PMC6509814 DOI: 10.1186/s12014-019-9240-6
Source DB: PubMed Journal: Clin Proteomics ISSN: 1542-6416 Impact factor: 3.988
Characteristics of the NSCLC patients and healthy controls
| Characteristics | Adenocarcinoma (stage) | SCC (stage) | Healthy control | ||||
|---|---|---|---|---|---|---|---|
| I/II | III | IV | I/II | III | IV | ||
| Age | |||||||
| Years, mean ± SD | 63 ± 5.2 | 56 ± 9.5 | 57 ± 10.3 | 64 ± 7.8 | 61 ± 9.0 | 61 ± 8.6 | 69 ± 6.6 |
| Gender | |||||||
| Male | 3 | 4 | 7 | 9 | 12 | 12 | 6 |
| Female | 5 | 4 | 5 | 0 | 0 | 1 | 6 |
| Smoking status | |||||||
| Ever | 4 | 4 | 7 | 8 | 12 | 12 | 7 |
| Never | 4 | 4 | 5 | 1 | 0 | 1 | 5 |
SCC, squamous cell carcinoma; SD, standard deviation
Fig. 1The glycopatterns of serum glycoproteins from NSCLC patients and healthy controls using the lectin microarrays. a The glycopatterns of Cy3-labeled serum proteins from Stage I/II adenocarcinoma, Stage III adenocarcinoma, Stage IV adenocarcinoma, Stage I/II SCC, Stage III SCC, Stage IV SCC and healthy controls bound to the lectin microarrays. A block of the slide with 3 replicates of 37 lectins was shown. Lectins showing the difference between adenocarcinoma and control were marked with white frames; lectins showing the difference between SCC and control were marked with yellow frames; and compared with control group, lectins showing the difference in both adenocarcinoma and SCC groups were marked with red frames. b Heat map and hierarchical clustering analysis of the normalized data of 37 lectins in the 7 groups. The groups were listed in columns, and the lectins were listed in rows. The color and intensity of each square indicated lectin signals relative to other groups in the row. Red, high; green, low; black, medium
Differences in the glycopattern of serum proteins between adenocarcinoma groups and healthy control by the lectin microarray analysis based on data of 18 lectins giving significant differences
| Lectin | Specificity | Fold change | ||
|---|---|---|---|---|
| I/II Adenocarcinoma/healthy | III Adenocarcinoma/healthy | IV Adenocarcinoma/healthy | ||
| Jacalin | Galβ1-3GalNAcα-Ser/Thr(T), sialyl-T(ST) | 1.68 | 1.86*** | 2.11** |
| HHL | High-Mannose, Manα1-3Man, Manα1-6Man, Man5-GlcNAc2-Asn | 2.85** | 3.16* | 3.13* |
| PTL-I | GalNAc, GalNAcα-1, 3Gal, GalNAcα-1, 3Galβ-1,3/4Glc | 3.49** | 3.85** | 2.81* |
| SJA | Terminal in GalNAc and Gal | 2.98** | 2.73** | 1.55 |
| AAL | Fucα1-6GlcNAc(core fucose), Fucα1-3 (Galβ1-4) GlcNAc | 2.09*** | 2.71** | 3.57** |
| LTL | Fucα1-2Galβ1-4GlcNAc, Fucα1-3(Galβ1-4) GlcNAc | 0*** | 0*** | 0** |
| GSL-I | αGalNAc,GalNAcα-Ser/Thr (Tn) and αGal | /** | /** | /*** |
| DBA | GalNAcα-Ser/Thr(Tn) and GalNAcα1-3Gal | 4.27* | – | – |
| RCA-120 | β-Gal, Galβ-1, 4GlcNAc(type II), Galβ1-3GlcNAc (type I) | 0.13** | 0.10*** | 0.09** |
| STL | Trimers and tetramers of GlcNAc, core (GlcNAc) of | 0.43** | 0.45** | 0.44** |
| BS-I | αGal and αGalNAc | /*** | /*** | /** |
| ConA | High-Mannose, Manα1-6(Manα1-3)Man, terminal GlcNAc | 0.35*** | 0.35*** | 0.36*** |
| DSA | β-D-GlcNAc, (GlcNAcβ1-4)n, Galβ1-4GlcNAc | 3.77*** | 3.62*** | 3.49*** |
| SBA | Terminal GalNAc (especially GalNAcα1-3Gal) | 11.75*** | 13.96*** | 16.31*** |
| PSA | α-D-Man, Fucα-1, 6GlcNAc (core fucose), α-D-Glc | 9.36** | 5.92*** | 6.20** |
| UEA-I | Fucα1-2Galβ1-4GlcNAc | 7.99 | 5.29*** | 4.46** |
| MAL-I | Galβ-1,4GlcNAc, Siaα2-3Gal, Galβ1-3GlcNAc, Siaα2-3 | /** | /*** | /*** |
| BPL | Galβ1-3GalNAc, terminal GalNAc | /** | /* | /* |
–, no significant difference; /, the denominator of the fold change was zero
*P < 0.05, **P < 0.01, ***P < 0.001
Fig. 2Lectins revealed significant differences among Stage I/II, Stage III, and Stage IV adenocarcinoma groups according to ANOVA. *P < 0.05, **P < 0.01, ***P < 0.001
Differences in serum glycopatterns between SCC groups and healthy control by the lectin microarray analysis based on data of 16 lectins giving significant differences
| Lectin | Specificity | Fold change | ||
|---|---|---|---|---|
| I/II SCC/healthy | III SCC/healthy | IV SCC/healthy | ||
| Jacalin | Galβ1-3GalNAcα-Ser/Thr(T), sialyl-T(ST) | 0.30*** | 0.17*** | 0.23*** |
| HHL | High-Mannose, Manα1-3Man, Manα1-6Man, Man5-GlcNAc2-Asn | 2.59* | 2.32* | 2.52* |
| MAL-II | Siaα2-3Galβ1-4Glc(NAc)/Glc, SLex | 0** | 0** | 0** |
| PTL-I | GalNAc, GalNAcα-1, 3Gal, GalNAcα-1, 3Galβ-1,3/4Glc | 6.63** | 6.61*** | 6.36** |
| SJA | Terminal in GalNAc and Gal | 3.61** | 3.37** | 3.01** |
| EEL | Galα1-3(Fucα1-2)Gal | 0.66 | 0.11*** | 0.14*** |
| LTL | Fucα1-2Galβ1-4GlcNAc, Fucα1-3 (Galβ1-4) GlcNAc | 0** | 0** | 0** |
| DBA | GalNAcα-Ser/Thr(Tn) and GalNAcα1-3Gal | 0* | 0 | 0* |
| RCA-120 | β-Gal, Galβ-1, 4GlcNAc (type II), Galβ1-3GlcNAc (type I) | 0.44** | 0.46*** | 0.39** |
| STL | Trimers and tetramers of GlcNAc, core (GlcNAc) of | 0.35** | 0.31** | 0.33** |
| BS-I | αGal and αGalNAc | /** | /*** | /** |
| DSA | β-D-GlcNA, (GlcNAcβ1-4)n, Galβ1-4GlcNAc | 4.02*** | 2.94 | 3.77*** |
| SBA | Terminal GalNAc (especially GalNAcα1-3Gal) | 15.57*** | 14.21*** | 13.32*** |
| UEA-I | Fucoseα1-2Galβ1-4GlcNAc | 8.00* | 8.81*** | 7.86*** |
| BPL | Galβ1-3GalNAc, terminal GalNAc | /*** | /*** | /** |
| PHA-E+L | Bisecting GlcNAc, biantennary | 8.80*** | 11.52** | 9.86** |
SCC squamous cell carcinoma
/, the denominator of the fold change was zero
*P < 0.05, **P < 0.01, ***P < 0.001