Literature DB >> 31160082

Can Environmental RNA Revolutionize Biodiversity Science?

Melania E Cristescu1.   

Abstract

The use of environmental RNA (eRNA) for species identification remains unexplored due to the observation that in vitro RNA is much less stable than DNA. However, recent lines of evidence suggest that RNA may be abundantly excreted by organisms and sufficiently persistent in the environment to reconstruct community composition and gene expression.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Keywords:  environmental DNA (eDNA); environmental RNA (eRNA); environmental transcriptomics; metabarcoding; molecular markers; second-generation sequencing

Year:  2019        PMID： 31160082     DOI： 10.1016/j.tree.2019.05.003

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN： 0169-5347            Impact factor:   17.712


  17 in total

1.  Metagenomics versus total RNA sequencing: most accurate data-processing tools, microbial identification accuracy and perspectives for ecological assessments.

Authors:  Christopher A Hempel; Natalie Wright; Julia Harvie; Jose S Hleap; Sarah J Adamowicz; Dirk Steinke
Journal:  Nucleic Acids Res       Date:  2022-08-18       Impact factor: 19.160

2.  Environmental RNA as a Tool for Marine Community Biodiversity Assessments.

Authors:  Marissa S Giroux; Jay R Reichman; Troy Langknecht; Robert M Burgess; Kay T Ho
Journal:  Sci Rep       Date:  2022-10-22       Impact factor: 4.996

3.  Profile hidden Markov model sequence analysis can help remove putative pseudogenes from DNA barcoding and metabarcoding datasets.

Authors:  T M Porter; M Hajibabaei
Journal:  BMC Bioinformatics       Date:  2021-05-19       Impact factor: 3.169

Review 4.  Environmental DNA and RNA as Records of Human Exposome, Including Biotic/Abiotic Exposures and Its Implications in the Assessment of the Role of Environment in Chronic Diseases.

Authors:  Indu Shekhar Thakur; Deodutta Roy
Journal:  Int J Mol Sci       Date:  2020-07-10       Impact factor: 5.923

5.  An eDNA/eRNA-based approach to investigate the life cycle of non-cultivable shellfish micro-parasites: the case of Bonamia ostreae, a parasite of the European flat oyster Ostrea edulis.

Authors:  Nicolas Mérou; Cyrielle Lecadet; Stéphane Pouvreau; Isabelle Arzul
Journal:  Microb Biotechnol       Date:  2020-07-01       Impact factor: 5.813

6.  Environmental (e)RNA advances the reliability of eDNA by predicting its age.

Authors:  Nathaniel T Marshall; Henry A Vanderploeg; Subba Rao Chaganti
Journal:  Sci Rep       Date:  2021-02-02       Impact factor: 4.379

7.  Metabarcoding on both environmental DNA and RNA highlights differences between fungal communities sampled in different habitats.

Authors:  Martino Adamo; Samuele Voyron; Matteo Chialva; Roland Marmeisse; Mariangela Girlanda
Journal:  PLoS One       Date:  2020-12-30       Impact factor: 3.240

8.  Detection of SARS-CoV-2 RNA in bivalve mollusks and marine sediments.

Authors:  David Polo; Marta Lois; María Teresa Fernández-Núñez; Jesús L Romalde
Journal:  Sci Total Environ       Date:  2021-05-06       Impact factor: 7.963

9.  Coupled DNA-labeling and sequencing approach enables the detection of viable-but-non-culturable Vibrio spp. in irrigation water sources in the Chesapeake Bay watershed.

Authors:  Leena Malayil; Suhana Chattopadhyay; Emmanuel F Mongodin; Amy R Sapkota
Journal:  Environ Microbiome       Date:  2021-06-22

10.  Detection of SARS-CoV-2 RNA in Bivalve Mollusks by Droplet Digital RT-PCR (dd RT-PCR).

Authors:  Andrea Mancusi; Federico Capuano; Santa Girardi; Orlandina Di Maro; Elisabetta Suffredini; Denise Di Concilio; Lucia Vassallo; Maria Concetta Cuomo; Maria Tafuro; Daniel Signorelli; Andrea Pierri; Antonio Pizzolante; Pellegrino Cerino; Giuseppina La Rosa; Yolande Thérèse Rose Proroga; Biancamaria Pierri
Journal:  Int J Environ Res Public Health       Date:  2022-01-14       Impact factor: 3.390
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