| Literature DB >> 31157518 |
Gaurav Nepal1, Jayant Kumar Yadav1, YuHui Kong2.
Abstract
BACKGROUND: The intercellular adhesion molecule-1 (ICAM-1)/leukocyte function associated antigen-1 (LFA-1) adhesion system regulates leukocyte interactions, migration, and adhesion, and appears to play an important role in atherosclerosis and thrombosis. Therefore, single nucleotide polymorphisms (SNPs) of the ICAM-1 gene may strongly influence the expression and biological activity of ICAM-1 and play a potentially important role in the pathogenesis of ischemic stroke. In the current meta-analysis, we investigated the relationship between the ICAM-1 gene K469E SNP and the risk of ischemic stroke.Entities:
Keywords: ICAM-1; K469E; Lys469Glu; rs5498; cerebral infarct; ischemic stroke; polymorphism
Mesh:
Substances:
Year: 2019 PMID: 31157518 PMCID: PMC6625125 DOI: 10.1002/mgg3.784
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Figure 1Flow of systematic literature search and selection
Key methodological characteristics of studies included in this meta‐analysis
| Author | Year | Country | Ethnicity | Source of controls | Sample size (case/control) | Genotyping method | Genotypes distribution (case/control) | Allelic distribution (case/control) | HWE | Quality score | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KK | EK | EE | E | K | |||||||||
| Pola | 2003 | Italy | Caucasian | HB | 119/133 | PCR‐RFLP | 24/49 | 63/68 | 32/16 | 127/100 | 111/166 | Yes | 12 |
| Shang | 2004 | China | Asian | PB | 53/71 | PCR‐RFLP | 25/42 | 17/24 | 11/5 | 39/34 | 67/108 | Yes | 11 |
| Flex | 2004 | Italy | Caucasian | HB | 237/223 | PCR‐RFLP | 53/75 | 112/125 | 72/23 | 256/171 | 218/275 | Yes | 12 |
| Sun | 2005 | China | Asian | PB | 76/105 | PCR‐RFLP | 42/42 | 30/44 | 4/19 | 38/82 | 114/128 | Yes | 11 |
| Wei | 2005 | China | Asian | PB | 205/210 | PCR‐RFLP | 74/95 | 99/97 | 32/18 | 163/133 | 247/287 | Yes | 11 |
| Liu | 2005 | China | Asian | HB | 142/101 | PCR‐RFLP | 65/50 | 65/44 | 12/7 | 89/58 | 195/144 | Yes | 9 |
| 2006 | China | Asian | PB | 112/105 | PCR‐RFLP | 59/29 | 35/44 | 18/32 | 71/108 | 153/102 | Yes | 10 | |
| You | 2007 | China | Asian | PB | 177/112 | PCR‐RFLP | 72/62 | 86/40 | 19/10 | 124/60 | 230/164 | Yes | 9 |
| Zhou | 2007 | China | Asian | PB | 92/121 | PCR‐RFLP | 37/61 | 39/41 | 16/19 | 71/79 | 113/163 | No | 9 |
| Zhang | 2007 | China | Asian | HB | 309/309 | PCR‐RFLP | 149/192 | 131/102 | 29/15 | 189/130 | 429/488 | Yes | 11 |
| Sun | 2009 | China | Asian | PB | 92/110 | PCR‐RFLP | 48/31 | 29/46 | 15/33 | 58/114 | 126/106 | Yes | 11 |
| Li | 2009 | China | Asian | PB | 309/309 | PCR‐RFLP | 148/192 | 132/102 | 29/15 | 190/132 | 428/486 | Yes | 12 |
| Volcik | 2010 | USA | Caucasian | PB | 290/9593 | TaqMan PCR | 99/3111 | 138/4836 | 53/1646 | N/A | N/A | Yes | 11 |
| Volcik | 2010 | USA | Black | PB | 223/3181 | TaqMan PCR | 159/2129 | 60/942 | 4/110 | N/A | N/A | Yes | 11 |
| Geng | 2011 | China | Caucasian | PB | 100/110 | PCR‐RFLP | 65/52 | 23/43 | 12/15 | 47/73 | 153/147 | Yes | 10 |
| Guo | 2011 | China | Asian | PB | 115/99 | PCR‐RFLP | 35/50 | 60/42 | 20/7 | 100/56 | 130/142 | Yes | 9 |
| Zhang | 2012 | China | Asian | PB | 120/102 | PCR‐RFLP | 28/39 | 52/46 | 40/17 | 132/80 | 108/124 | Yes | 12 |
| Motawi | 2012 | Egypt | Caucasian | PB | 63/75 | T‐ gradient PCR | 21/45 | 15/21 | 27/9 | 69/39 | 57/111 | Yes | 11 |
| Mohy | 2015 | Egypt | Caucasian | PB | 40/40 | PCR‐RFLP | 7/25 | N/A | N/A | 35/15 | 45/65 | Yes | 8 |
| Wang | 2015 | China | Asian | PB | 50/50 | TaKaRa PCR kits | 41/35 | 4/7 | 5/8 | 14/27 | 86/73 | No | 10 |
| Jiang | 2016 | China | Asian | PB | 213/223 | PCR‐RFLP | 111/76 | 86/88 | 26/60 | 128/207 | 170/34 | Yes | 12 |
Abbreviations: PB: Population based; HB: Hospital based; N/A: Not available; HWE: Hardy–Weinberg equilibrium; PCR‐RFLP: Polymerase chain reaction‐restriction fragment length polymorphism
Figure 2Forest plot of the result for allelic model
Figure 3Forest plot of the result for recessive model
Figure 4Forest plot of the result for dominant model
Figure 5Funnel plot for detection of publication bias in allelic model
Figure 6Funnel plot for detection of publication bias in recessive model
Figure 7Funnel plot for detection of publication bias in dominant model
Subgroup analysis based on ethnicity and recruitment of controls under different genetic models
| Subgroups | Allelic model | Recessive model | Dominant model | ||
|---|---|---|---|---|---|
| Ethnicity | Caucasians | No of Studies | 5 | 6 | 6 |
| Effect size | OR: 1.86; 95% CI: 1.09 to 3.17; | OR: 2.17; 95% CI: 1.08 to 4.36; | OR: 1.71; 95% CI: 1.0 to 2.9; | ||
| Heterogeneity |
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| Asians | No of Studies | 14 | 13 | 14 | |
| Effect size | OR: 0.93; 95% CI: 0.63 to 1.38; | OR: 1.1; 95% CI: 0.71 to 1.72; | OR: 1.25; 95% CI: 0.88 to 1.78; | ||
| Heterogeneity |
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| Blacks | No of Studies | N/A | 1 | 1 | |
| Effect size | N/A | OR: 0.81; 95% CI: 0.6 to 1.10; | OR: 0.81; 95% CI: 0.6 to 1.10; | ||
| Heterogeneity | N/A | N/A | N/A | ||
| Source of controls | Hospital based | No of Studies | 4 | 4 | 4 |
| Effect size | OR: 1.56; 95% CI: 1.21 to 2.01; | OR: 2.08; 95% CI: 1.13 to 3.8; | OR: 1.63; 95% CI: 1.25 to 2.12; | ||
| Heterogeneity |
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| Community based | No of Studies | 15 | 16 | 17 | |
| Effect size | OR: 1.01; 95% CI: 0.66 to 1.54; | OR: 1.09; 95% CI: 0.74 to 1.62; | OR: 1.27; 95% CI: 0.92 to 1.75; | ||
| Heterogeneity |
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Figure 8Meta‐regression plot for allelic model
Figure 9Meta‐regression plot for recessive model
Figure 10Meta‐regression plot for dominant model