Literature DB >> 31147659

The optimal DFT approach in DP4 NMR structure analysis - pushing the limits of relative configuration elucidation.

Kristaps Ermanis1, Kevin E B Parkes2, Tatiana Agback3, Jonathan M Goodman4.   

Abstract

What computational methods should be used to achieve the most reliable result in computational structure elucidation? A study on the effect of quality and quantity of geometries on computational NMR structure elucidation performance is reported. Semi-empirical, HF and DFT methods were explored, and B3LYP optimized geometries in combination with mPW1PW91 shifts and M06-2X conformer energies was found to be best. The required number of conformers considered has also been investigated, as well as several methods for the reduction of this number. Clear guidelines for the best computational NMR structure elucidation methods for different levels of available computing power are provided.

Entities:  

Year:  2019        PMID: 31147659     DOI: 10.1039/c9ob00840c

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  7 in total

1.  Synergism of anisotropic and computational NMR methods reveals the likely configuration of phormidolide A.

Authors:  Ikenna E Ndukwe; Xiao Wang; Nelson Y S Lam; Kristaps Ermanis; Kelsey L Alexander; Matthew J Bertin; Gary E Martin; Garrett Muir; Ian Paterson; Robert Britton; Jonathan M Goodman; Eric J N Helfrich; Jörn Piel; William H Gerwick; R Thomas Williamson
Journal:  Chem Commun (Camb)       Date:  2020-07-09       Impact factor: 6.222

2.  A New Labdane-Type Diterpene, 6-O-Acetyl-(12R)-epiblumdane, from Stevia rebaudiana Leaves with Insulin Secretion Effect.

Authors:  Heesun Kang; Dahae Lee; Ki Sung Kang; Ki Hyun Kim
Journal:  Biomedicines       Date:  2022-04-03

3.  Computational NMR Spectroscopy of Ionic Liquids: [C4C1im]Cl/Water Mixtures.

Authors:  Giacomo Saielli
Journal:  Molecules       Date:  2020-04-29       Impact factor: 4.411

4.  Synthesis of the C1-C27 Fragment of Stambomycin D Validates Modular Polyketide Synthase-Based Stereochemical Assignments.

Authors:  Jieyan Lim; Venkaiah Chintalapudi; Haraldur G Gudmundsson; Minh Tran; Alice Bernasconi; Araceli Blanco; Lijiang Song; Gregory L Challis; Edward A Anderson
Journal:  Org Lett       Date:  2021-09-08       Impact factor: 6.005

5.  The DP5 probability, quantification and visualisation of structural uncertainty in single molecules.

Authors:  Alexander Howarth; Jonathan M Goodman
Journal:  Chem Sci       Date:  2022-02-25       Impact factor: 9.825

6.  Donghaecyclinones A-C: New Cytotoxic Rearranged Angucyclinones from a Volcanic Island-Derived Marine Streptomyces sp.

Authors:  Munhyung Bae; Joon Soo An; Seong-Heon Hong; Eun Seo Bae; Beomkoo Chung; Yun Kwon; Suckchang Hong; Ki-Bong Oh; Jongheon Shin; Sang Kook Lee; Dong-Chan Oh
Journal:  Mar Drugs       Date:  2020-02-18       Impact factor: 5.118

7.  Untargeted Metabolomics Approach for the Discovery of Environment-Related Pyran-2-ones Chemodiversity in a Marine-Sourced Penicillium restrictum.

Authors:  Van-Tuyen Le; Samuel Bertrand; Thibaut Robiou du Pont; Fabrice Fleury; Nathalie Caroff; Sandra Bourgeade-Delmas; Emmanuel Gentil; Cedric Logé; Gregory Genta-Jouve; Olivier Grovel
Journal:  Mar Drugs       Date:  2021-06-29       Impact factor: 5.118

  7 in total

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