| Literature DB >> 31146742 |
Manyi Sun1, Jin Zhong2, Li Zhang3, Songli Shi3.
Abstract
BACKGROUND: There are several studies with inconsistent conclusions regarding the association between the rs1801133 and rs1801131 polymorphisms within the MTHFR (methylenetetrahydrofolate reductase) gene and colorectal polyp risk. This discrepancy led us to assess the genetic impact of the two polymorphisms on the susceptibility to colorectal polyps.Entities:
Keywords: Colorectal polyps; MTHFR; Polymorphism; Susceptibility
Mesh:
Substances:
Year: 2019 PMID: 31146742 PMCID: PMC6543585 DOI: 10.1186/s12881-019-0822-y
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Main features of eligible studies for pooled analysis
| First author | Year | NOS | Polymorphism | Case | Disease type | Control | Country | Ethnicity | Genotyping assay |
| ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A/A | A/B | B/B | A/A | A/B | B/B | |||||||||
| Al-Ghnaniem [ | 2007 | 7 | rs1801133 | 22 | 12 | 1 | adenomatous polyps | 41 | 29 | 6 | UK | Caucasian | PCR-RFLP | 0.784 |
| rs1801133 | 11 | 3 | 3 | hyperplastic polyps | 41 | 29 | 6 | UK | Caucasian | PCR-RFLP | 0.784 | |||
| rs1801131 | 18 | 12 | 5 | adenomatous polyps | 47 | 26 | 3 | UK | Caucasian | PCR-RFLP | 0.799 | |||
| rs1801131 | 8 | 7 | 2 | hyperplastic polyps | 47 | 26 | 3 | UK | Caucasian | PCR-RFLP | 0.799 | |||
| Ashktorab [ | 2007 | 6 | rs1801133 | 18 | 4 | 0 | colorectal polyps | 30 | 5 | 0 | USA | Caucasian | PCR-RFLP | 0.649 |
| Beckett [ | 2015 | 5 | rs1801133 | 29 | 20 | 7 | adenomatous polyps | 88 | 91 | 18 | Australia | Caucasian | PCR-RFLP | 0.421 |
| rs1801131 | 28 | 22 | 6 | adenomatous polyps | 101 | 83 | 13 | Australia | Caucasian | PCR-RFLP | 0.460 | |||
| Chen [ | 1998 | 8 | rs1801133 | 102 | 126 | 30 | adenomatous polyps | 323 | 324 | 66 | USA | Caucasian | PCR-RFLP | 0.234 |
| Chiang [ | 2015 | 7 | rs1801133 | 44 | 26 | 0 | adenomatous polyps | 91 | 73 | 18 | China | Asian | PCR-RFLP | 0.553 |
| de Vogel [ | 2011 | 6 | rs1801133 | 947 | 714 | 135 | adenomatous polyps | 4463 | 3563 | 708 | Norway | Caucasian | Real-time PCR | 0.933 |
| Delgado [ | 2001 | 8 | rs1801133 | 6 | 19 | 7 | adenomatous polyps | 34 | 52 | 24 | Mexico | Caucasian | PCR-RFLP | 0.625 |
| Giovannucci [ | 2003 | 6 | rs1801133 | 157 | 168 | 49 | adenomatous polyps | 299 | 325 | 101 | USA | Caucasian | PCR-RFLP | 0.401 |
| rs1801131 | 186 | 165 | 24 | adenomatous polyps | 369 | 299 | 57 | USA | Caucasian | PCR-RFLP | 0.740 | |||
| Goode [ | 2004 | 7 | rs1801133 | 236 | 196 | 58 | adenomatous polyps | 259 | 238 | 67 | USA | Caucasian | PCR-RFLP | 0.281 |
| Hazra [ | 2007 | 7 | rs1801133 | 217 | 245 | 63 | adenomatous polyps | 229 | 232 | 64 | USA | Caucasian | NA | 0.658 |
| rs1801131 | 278 | 211 | 48 | adenomatous polyps | 264 | 219 | 46 | USA | Caucasian | NA | 0.951 | |||
| Hirose [ | 2005 | 8 | rs1801133 | 182 | 203 | 67 | adenomatous polyps | 399 | 496 | 155 | Japan | Asian | PCR-RFLP | 0.966 |
| Yi [ | 2006 | 6 | rs1801133 | 5 | 5 | 4 | adenomatous polyps | 2 | 4 | 0 | Korea | Asian | PCR-RFLP | 0.221 |
| rs1801131 | 10 | 3 | 1 | adenomatous polyps | 3 | 3 | 0 | Korea | Asian | PCR-RFLP | 0.414 | |||
| Levine [ | 2000 | 7 | rs1801133 | 256 | 163 | 52 | adenomatous polyps | 263 | 198 | 49 | USA | Caucasian | PCR-RFLP | 0.193 |
| Lightfoot [ | 2008 | 8 | rs1801133 | 135 | 132 | 41 | adenomatous polyps | 130 | 139 | 27 | UK | Caucasian | Taqman drug metabolizing genotyping assays | 0.238 |
| rs1801131 | 155 | 124 | 29 | adenomatous polyps | 140 | 130 | 26 | UK | Caucasian | Taqman drug metabolizing genotyping assays | 0.590 | |||
| Marugame [ | 2000 | 8 | rs1801133 | 83 | 92 | 30 | adenomatous polyps | 89 | 105 | 26 | Japan | Asian | PCR-RFLP | 0.555 |
| Mitrou [ | 2006 | 7 | rs1801133 | 405 | 376 | 87 | adenomatous polyps | 402 | 407 | 89 | UK | Caucasian | PCR-RFLP | 0.340 |
| rs1801131 | 383 | 375 | 104 | adenomatous polyps | 415 | 380 | 88 | UK | Caucasian | PCR-RFLP | 0.941 | |||
| Pufulete [ | 2003 | 7 | rs1801133 | 20 | 13 | 2 | adenomatous polyps | 41 | 29 | 6 | UK | Caucasian | PCR-RFLP | 0.784 |
| rs1801131 | 18 | 12 | 5 | adenomatous polyps | 47 | 26 | 3 | UK | Caucasian | PCR-RFLP | 0.799 | |||
| Ulrich [ | 1999 | 9 | rs1801133 | 258 | 219 | 50 | adenomatous polyps | 303 | 269 | 73 | USA | Caucasian | PCR-RFLP | 0.260 |
| Ulrich [ | 2000 | 7 | rs1801133 | 98 | 72 | 26 | hyperplastic polyps | 297 | 258 | 71 | USA | Caucasian | PCR-RFLP | 0.192 |
| van den [ | 2005 | 7 | rs1801133 | 343 | 346 | 79 | adenomatous polyps | 325 | 305 | 79 | Netherlands | Caucasian | PCR-RFLP | 0.560 |
| Williams [ | 2013 | 7 | rs1801133 | 34 | 48 | 8 | adenomatous polyps | 44 | 42 | 9 | UK | Caucasian | PCR-RFLP | 0.822 |
| Yamaji [ | 2009 | 6 | rs1801133 | 263 | 325 | 124 | adenomatous polyps | 219 | 324 | 120 | Japan | Asian | TaqMan PCR | 0.993 |
| rs1801131 | 452 | 228 | 32 | adenomatous polyps | 441 | 197 | 25 | Japan | Asian | TaqMan PCR | 0.609 | |||
A/A C/C genotype of rs1801133, or A/A genotype of rs1801131, A/B C/T genotype of rs1801133, or A/C genotype of rs1801131, B/B T/T genotype of rs1801133, or C/C genotype of rs1801131, NA not available, PCR-RFLP polymerase chain reaction-restriction fragment length polymorphism, HWE Hardy-Weinberg Equilibrium, NOS Newcastle-Ottawa Scale
FIG. 1Flowchart of database searching and record screening process
Pooled analysis for the MTHFR rs1801133 polymorphism
| Comparison | Subgroup | Sample size | Test of association | |||
|---|---|---|---|---|---|---|
| Studies | Case/control | RRs (95% CIs) | z |
| ||
| allele T vs. allele C | overall | 23 | 8321/17,731 | 0.98 (0.95, 1.01) | 1.42 | 0.156 |
| UK | 6 | 1353/1517 | 0.99 (0.92, 1.07) | 0.14 | 0.886 | |
| USA | 8 | 2863/4343 | 1.00 (0.95, 1.05) | 0.14 | 0.890 | |
| Japan | 3 | 1369/1933 | 0.97 (0.91, 1.03) | 1.03 | 0.301 | |
| Caucasian | 18 | 6868/15,610 | 0.99 (0.96, 1.02) | 0.86 | 0.391 | |
| Asian | 5 | 1453/2121 | 0.95(0.90, 1.01) | 1.53 | 0.126 | |
| hyperplastic polyps | 2 | 213/702 | 0.99 (0.84, 1.16) | 0.13 | 0.897 | |
| adenomatous polyps | 20 | 8086/16,994 | 0.98 (0.95, 1.01) | 1.43 | 0.153 | |
| TT vs. CC | overall | 22 | 8317/17,696 | 0.97 (0.90, 1.05) | 0.75 | 0.454 |
| UK | 6 | 1353/1517 | 1.05 (0.85, 1.30) | 0.47 | 0.641 | |
| USA | 7 | 2841/4308 | 1.01 (0.89, 1.14) | 0.11 | 0.913 | |
| Japan | 3 | 1369/1933 | 0.95 (0.82, 1.11) | 0.61 | 0.540 | |
| Caucasian | 17 | 6846/15,575 | 0.99 (0.91, 1.08) | 0.31 | 0.760 | |
| Asian | 5 | 1453/2121 | 0.92(0.80, 1.07) | 1.06 | 0.291 | |
| hyperplastic polyps | 2 | 213/702 | 1.13 (0.77, 1.65) | 0.62 | 0.532 | |
| adenomatous polyps | 20 | 8086/16,994 | 0.97(0.77, 1.65) | 0.88 | 0.377 | |
| CT vs. CC | overall | 23 | 8321/17,731 | 0.97 (0.94, 1.00) | 1.77 | 0.077 |
| UK | 6 | 1353/1517 | 0.96 (0.89, 1.04) | 0.93 | 0.351 | |
| USA | 8 | 2863/4343 | 0.99 (0.94, 1.04) | 0.44 | 0.663 | |
| Japan | 3 | 1369/1933 | 0.94 (0.88, 1.01) | 1.67 | 0.094 | |
| Caucasian | 18 | 6868/15,610 | 0.98 (0.95, 1.01) | 1.11 | 0.269 | |
| Asian | 5 | 1453/2121 | 0.94 (0.87, 1.00) | 1.92 | 0.055 | |
| hyperplastic polyps | 2 | 213/702 | 0.88 (0.73, 1.07) | 1.27 | 0.205 | |
| adenomatous polyps | 20 | 8086/16,994 | 0.98 (0.95, 1.01) | 1.58 | 0.113 | |
| CT + TT vs. CC | overall | 23 | 8321/17,731 | 0.98 (0.95, 1.00) | 1.76 | 0.079 |
| UK | 6 | 1353/1517 | 0.98 (0.91, 1.06) | 0.66 | 0.511 | |
| USA | 8 | 2863/4343 | 0.99 (0.95, 1.04) | 0.33 | 0.743 | |
| Japan | 3 | 1369/1933 | 0.96 (0.91, 1.01) | 1.53 | 0.125 | |
| Caucasian | 18 | 6868/15,610 | 0.98 (0.96, 1.01) | 1.08 | 0.280 | |
| Asian | 5 | 1453/2121 | 0.95 (0.90, 1.00) | 1.95 | 0.052 | |
| hyperplastic polyps | 2 | 213/702 | 0.94 (0.80, 1.09) | 0.82 | 0.414 | |
| adenomatous polyps | 20 | 8086/16,994 | 0.98 (0.95, 1.00) | 1.65 | 0.098 | |
| TT vs. CC + CT | overall | 22 | 8317/17,696 | 0.99 (0.92, 1.07) | 0.19 | 0.847 |
| UK | 6 | 1353/1517 | 1.09 (0.87, 1.36) | 078 | 0.436 | |
| USA | 7 | 2841/4308 | 1.02 (0.89, 1.16) | 0.23 | 0.822 | |
| Japan | 3 | 1369/1933 | 1.01 (0.86, 1.18) | 0.08 | 0.934 | |
| Caucasian | 17 | 6846/15,575 | 1.00 (0.91, 1.09) | 0.07 | 0.944 | |
| Asian | 5 | 1453/2121 | 0.98 (0.83, 1.15) | 0.28 | 0.780 | |
| hyperplastic polyps | 2 | 213/702 | 1.23 (0.83, 1.84) | 1.04 | 0.299 | |
| adenomatous polyps | 20 | 8086/16,994 | 0.98(0.91, 1.84) | 0.39 | 0.696 | |
| carrier T vs. carrier C | overall | 23 | 8321/17,731 | 0.99 (0.96, 1.01) | 0.99 | 0.322 |
| UK | 6 | 1353/1517 | 0.99 (0.92, 1.07) | 0.21 | 0.831 | |
| USA | 8 | 2863/4343 | 1.00 (0.95, 1.05) | 0.15 | 0.883 | |
| Japan | 3 | 1369/1933 | 0.98 (0.91, 1.05) | 0.69 | 0.491 | |
| Caucasian | 18 | 6868/15,610 | 0.99 (0.96, 1.02) | 0.64 | 0.523 | |
| Asian | 5 | 1453/2121 | 0.97 (0.90, 1.03) | 0.99 | 0.322 | |
| hyperplastic polyps | 2 | 213/702 | 0.98 (0.82, 1.16) | 0.26 | 0.793 | |
| adenomatous polyps | 20 | 8086/16,994 | 0.99(0.96, 1.02) | 0.97 | 0.331 | |
RRs Risk ratios, CIs Confidence intervals
FIG. 2Subgroup analysis by disease type of association between MTHFR rs1801133 polymorphism and colorectal polyp risk under the allele T vs. allele C model
Pooled analysis for the MTHFR rs1801131 polymorphism
| Comparison | Subgroup | Sample size | Test of association | |||
|---|---|---|---|---|---|---|
| Studies | case/control | RRs (95% CIs) | z |
| ||
| allele C vs. allele A | overall | 10 | 2951/3527 | 1.05 (0.99, 1.11) | 1.60 | 0.109 |
| UK | 5 | 1257/1407 | 1.08 (0.99, 1.17) | 1.79 | 0.073 | |
| Caucasian | 8 | 2225/2858 | 1.04 (0.98, 1.10) | 1.22 | 0.222 | |
| adenomatous polyps | 9 | 2934/3451 | 1.04 (0.99, 1.10) | 1.48 | 0.138 | |
| CC vs. AA | overall | 10 | 2951/3527 | 1.15 (0.98, 1.35) | 1.69 | 0.091 |
| UK | 5 | 1257/1407 | 1.27 (1.02, 1.57) | 2.14 |
| |
| Caucasian | 8 | 2225/2858 | 1.14 (0.96, 1.35) | 1.50 | 0.133 | |
| adenomatous polyps | 9 | 2934/3451 | 1.14 (0.97, 1.34) | 1.58 | 0.114 | |
| AC vs. AA | overall | 10 | 2951/3527 | 1.02 (0.96, 1.08) | 0.63 | 0.528 |
| UK | 5 | 1257/1407 | 1.02 (0.93, 1.11) | 0.39 | 0.698 | |
| Caucasian | 8 | 2225/2858 | 1.01 (0.95, 1.07) | 0.25 | 0.805 | |
| adenomatous polyps | 9 | 2934/3451 | 1.02 (0.96, 1.08) | 0.56 | 0.576 | |
| AC + CC vs. AA | overall | 10 | 2951/3527 | 1.03 (0.98, 1.08) | 1.13 | 0.258 |
| UK | 5 | 1257/1407 | 1.04 (0.97, 1.12) | 1.08 | 0.279 | |
| Caucasian | 8 | 2225/2858 | 1.02 (0.97, 1.08) | 0.72 | 0.471 | |
| adenomatous polyps | 9 | 2934/3451 | 1.03 (0.98, 1.08) | 1.03 | 0.303 | |
| CC vs. AA + AC | overall | 10 | 2951/3527 | 1.15 (0.97, 1.36) | 1.64 | 0.100 |
| UK | 5 | 1257/1407 | 1.27 (1.02, 1.60) | 2.10 |
| |
| Caucasian | 8 | 2225/2858 | 1.14 (0.96, 1.36) | 1.49 | 0.135 | |
| adenomatous polyps | 9 | 2934/3451 | 1.14 (0.97, 1.35) | 1.55 | 0.122 | |
| carrier C vs. carrier A | overall | 10 | 2951/3527 | 1.03 (0.97, 1.09) | 0.96 | 0.336 |
| UK | 5 | 1257/1407 | 1.04 (0.96, 1.14) | 1.00 | 0.318 | |
| Caucasian | 8 | 2225/2858 | 1.02 (0.96, 1.09) | 0.68 | 0.499 | |
| adenomatous polyps | 9 | 2934/3451 | 1.03 (0.97, 1.09) | 0.88 | 0.376 | |
PB Population-based control, HB Hospital-based control, RRs Risk ratios, CIs Confidence intervals
Bold entries are significant
FIG. 3Subgroup analysis by country of association between MTHFR rs1801131 polymorphism and colorectal polyp risk under the CC vs. AA model
FIG. 4Subgroup analysis by country of association between MTHFR rs1801131 polymorphism and colorectal polyp risk under the CC vs. AA+AC model
The assessment of heterogeneity and publication bias
| polymorphism | Comparison | I2 | Model | Begg’s test | Egger’s test | |||
|---|---|---|---|---|---|---|---|---|
| z |
| t |
| |||||
| rs1801133 | allele T vs. allele C | 0.0% | 0.736 | Fixed | 0.69 | 0.492 | 0.46 | 0.651 |
| TT vs. CC | 0.0% | 0.799 | Fixed | 0.90 | 0.367 | 0.75 | 0.463 | |
| CT vs. CC | 0.0% | 0.705 | Fixed | 0.79 | 0.428 | −0.41 | 0.685 | |
| CT + TT vs. CC | 0.0% | 0.725 | Fixed | 0.11 | 0.916 | −0.02 | 0.984 | |
| TT vs. CC + CT | 0.0% | 0.790 | Fixed | 0.73 | 0.463 | 0.70 | 0.492 | |
| carrier T vs. carrier C | 0.0% | 0.999 | Fixed | 0.32 | 0.751 | 0.27 | 0.787 | |
| rs1801131 | allele C vs. allele A | 9.6% | 0.354 | Fixed | 1.16 | 0.245 | 1.41 | 0.195 |
| CC vs. AA | 14.3% | 0.311 | Fixed | 1.52 | 0.128 | 1.96 | 0.085 | |
| AC vs. AA | 0.0% | 0.800 | Fixed | 0.45 | 0.655 | −0.25 | 0.807 | |
| AC + CC vs. AA | 0.0% | 0.623 | Fixed | 1.34 | 0.180 | 0.64 | 0.541 | |
| CC vs. AA+AC | 8.3% | 0.366 | Fixed | 1.52 | 0.128 | 2.17 | 0.061 | |
| carrier C vs. carrier A | 0.0% | 0.918 | Fixed | 0.98 | 0.325 | 1.04 | 0.327 | |
FIG. 5Begg’s funnel plot and sensitivity analysis for MTHFR rs1801131 polymorphism and colorectal polyp risk under the CC vs. AA model. a Begg’s funnel plot; b Sensitivity analysis