Literature DB >> 31141333

Triplex Hybridization of siRNA with Bifacial Glycopolymer Nucleic Acid Enables Hepatocyte-Targeted Silencing.

Xin Xia1, Zhun Zhou2, Chris DeSantis2, John J Rossi1, Dennis Bong2.   

Abstract

Herein, we describe a versatile non-covalent strategy for packaging nucleic acid cargo with targeting modalities, based on triplex hybridization of oligo-uridylate RNA with bifacial polymer nucleic acid (bPoNA). Polyacrylate bPoNA was prepared and side chain-functionalized with N-acetylgalactosamine (GalNAc), which is known to enable delivery to hepatocytes and liver via binding to the asialoglycoprotein receptor (ASGPR). Polymer binding resulted in successful delivery of both native and synthetically modified siRNAs to HepG2 cells in culture, yielding in low nanomolar IC50 silencing of the endogenous ApoB target, in line with observations of expected Dicer processing of the polymer-siRNA targeting complex. Indeed, in vitro Dicer treatment of the polymer complex indicated that triplex hybridization does not impede RNA processing and release from the polymer. The complex itself elicited a quiescent immunostimulation profile relative to free RNA in a cytokine screen, setting the stage for a preliminary in vivo study in a high-calorie-diet mouse model. Gratifyingly, we observed significant ApoB silencing in a preliminary animal study, validating bPoNA as an in vivo carrier platform for systemic siRNA delivery. Thus, this new siRNA carrier platform exhibits generally useful function and is accessible through scalable synthesis. In addition to its utility as a carrier, the triplex-hybridizing synthetic platform could be useful for optimization screens of siRNA sequences using the identical polymer carriers, thus alleviating the need for covalent ligand modification of each RNA substrate.

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Year:  2019        PMID: 31141333      PMCID: PMC7001860          DOI: 10.1021/acschembio.9b00273

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  43 in total

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Review 4.  Engineering DNA-based functional materials.

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Authors:  Shuichi Hoshika; Isha Singh; Christopher Switzer; Robert W Molt; Nicole A Leal; Myong-Jung Kim; Myong-Sang Kim; Hyo-Joong Kim; Millie M Georgiadis; Steven A Benner
Journal:  J Am Chem Soc       Date:  2018-09-10       Impact factor: 15.419

6.  Nucleic acid analogs. The interaction of poly-9-vinyladenine with polyuridylic acid.

Authors:  H Kaye
Journal:  J Am Chem Soc       Date:  1970-09-23       Impact factor: 15.419

7.  Synthetic Polymer Hybridization with DNA and RNA Directs Nanoparticle Loading, Silencing Delivery, and Aptamer Function.

Authors:  Zhun Zhou; Xin Xia; Dennis Bong
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8.  Mechanims of stimulation of in vitro protein synthesis by some copolymers of styrene, vinyluracil, and vinyladenine with maleic acid and acrylic acid.

Authors:  S Boguslawski; P E Olson; M P Mertes
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9.  Bifacial peptide nucleic acid directs cooperative folding and assembly of binary, ternary, and quaternary DNA complexes.

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Journal:  Biochemistry       Date:  2013-09-03       Impact factor: 3.162

10.  Synthesis and self-assembly of a DNA molecular brush.

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Journal:  Biomacromolecules       Date:  2014-08-21       Impact factor: 6.988

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2.  Impact of bPNA Backbone Structural Constraints and Composition on Triplex Hybridization with DNA.

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3.  Context-Sensitive Cleavage of Folded DNAs by Loop-Targeting bPNAs.

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Review 4.  Unnatural bases for recognition of noncoding nucleic acid interfaces.

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Journal:  Biopolymers       Date:  2020-09-24       Impact factor: 2.505

5.  Screening of Minimalist Noncanonical Sites in Duplex DNA and RNA Reveals Context and Motif-Selective Binding by Fluorogenic Base Probes.

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Journal:  Chemistry       Date:  2021-11-24       Impact factor: 5.236

6.  Enhanced Triplex Hybridization of DNA and RNA via Syndiotactic Side Chain Presentation in Minimal bPNAs.

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Journal:  Biochemistry       Date:  2021-12-26       Impact factor: 3.321

  6 in total

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