Literature DB >> 26138550

Synthetic Polymer Hybridization with DNA and RNA Directs Nanoparticle Loading, Silencing Delivery, and Aptamer Function.

Zhun Zhou1, Xin Xia1, Dennis Bong1.   

Abstract

We report herein discrete triplex hybridization of DNA and RNA with polyacrylates. Length-monodisperse triazine-derivatized polymers were prepared on gram-scale by reversible addition-fragmentation chain-transfer polymerization. Despite stereoregio backbone heterogeneity, the triazine polymers bind T/U-rich DNA or RNA with nanomolar affinity upon mixing in a 1:1 ratio, as judged by thermal melts, circular dichroism, gel-shift assays, and fluorescence quenching. We call these polyacrylates "bifacial polymer nucleic acids" (bPoNAs). Nucleic acid hybridization with bPoNA enables DNA loading onto polymer nanoparticles, siRNA silencing delivery, and can further serve as an allosteric trigger of RNA aptamer function. Thus, bPoNAs can serve as tools for both non-covalent bioconjugation and structure-function nucleation. It is anticipated that bPoNAs will have utility in both bio- and nanotechnology.

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Year:  2015        PMID: 26138550      PMCID: PMC4512878          DOI: 10.1021/jacs.5b05481

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  40 in total

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Authors:  T Kawasaki; M Tokuhiro; N Kimizuka; T Kunitake
Journal:  J Am Chem Soc       Date:  2001-07-18       Impact factor: 15.419

2.  Dicer recognizes the 5' end of RNA for efficient and accurate processing.

Authors:  Jong-Eun Park; Inha Heo; Yuan Tian; Dhirendra K Simanshu; Hyeshik Chang; David Jee; Dinshaw J Patel; V Narry Kim
Journal:  Nature       Date:  2011-07-13       Impact factor: 49.962

3.  Peptide ligation and RNA cleavage via an abiotic template interface.

Authors:  Xijun Piao; Xin Xia; Jie Mao; Dennis Bong
Journal:  J Am Chem Soc       Date:  2015-03-16       Impact factor: 15.419

4.  Bifacial peptide nucleic acid as an allosteric switch for aptamer and ribozyme function.

Authors:  Xin Xia; Xijun Piao; Dennis Bong
Journal:  J Am Chem Soc       Date:  2014-05-12       Impact factor: 15.419

5.  Protein assembly directed by synthetic molecular recognition motifs.

Authors:  Mingming Ma; Dennis Bong
Journal:  Org Biomol Chem       Date:  2011-09-13       Impact factor: 3.876

Review 6.  Oligonucleotide delivery: a patent review (2010 - 2013).

Authors:  Santiago Grijalvo; Anna Aviñó; Ramon Eritja
Journal:  Expert Opin Ther Pat       Date:  2014-05-05       Impact factor: 6.674

7.  Therapeutic silencing of an endogenous gene by systemic administration of modified siRNAs.

Authors:  Jürgen Soutschek; Akin Akinc; Birgit Bramlage; Klaus Charisse; Rainer Constien; Mary Donoghue; Sayda Elbashir; Anke Geick; Philipp Hadwiger; Jens Harborth; Matthias John; Venkitasamy Kesavan; Gary Lavine; Rajendra K Pandey; Timothy Racie; Kallanthottathil G Rajeev; Ingo Röhl; Ivanka Toudjarska; Gang Wang; Silvio Wuschko; David Bumcrot; Victor Koteliansky; Stefan Limmer; Muthiah Manoharan; Hans-Peter Vornlocher
Journal:  Nature       Date:  2004-11-11       Impact factor: 49.962

8.  Controlled fusion of synthetic lipid membrane vesicles.

Authors:  Mingming Ma; Dennis Bong
Journal:  Acc Chem Res       Date:  2013-07-23       Impact factor: 22.384

9.  A combinatorial library of lipid-like materials for delivery of RNAi therapeutics.

Authors:  Akin Akinc; Andreas Zumbuehl; Michael Goldberg; Elizaveta S Leshchiner; Valentina Busini; Naushad Hossain; Sergio A Bacallado; David N Nguyen; Jason Fuller; Rene Alvarez; Anna Borodovsky; Todd Borland; Rainer Constien; Antonin de Fougerolles; J Robert Dorkin; K Narayanannair Jayaprakash; Muthusamy Jayaraman; Matthias John; Victor Koteliansky; Muthiah Manoharan; Lubomir Nechev; June Qin; Timothy Racie; Denitza Raitcheva; Kallanthottathil G Rajeev; Dinah W Y Sah; Jürgen Soutschek; Ivanka Toudjarska; Hans-Peter Vornlocher; Tracy S Zimmermann; Robert Langer; Daniel G Anderson
Journal:  Nat Biotechnol       Date:  2008-04-27       Impact factor: 54.908

10.  A simple ligand that selectively targets CUG trinucleotide repeats and inhibits MBNL protein binding.

Authors:  Jonathan F Arambula; Sreenivasa Rao Ramisetty; Anne M Baranger; Steven C Zimmerman
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-08       Impact factor: 11.205

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  12 in total

1.  Synthetic bPNAs as allosteric triggers of hammerhead ribozyme catalysis.

Authors:  Yufeng Liang; Jie Mao; Dennis Bong
Journal:  Methods Enzymol       Date:  2019-05-22       Impact factor: 1.600

2.  Small Molecule Recognition Triggers Secondary and Tertiary Interactions in DNA Folding and Hammerhead Ribozyme Catalysis.

Authors:  Jie Mao; Chris DeSantis; Dennis Bong
Journal:  J Am Chem Soc       Date:  2017-07-13       Impact factor: 15.419

3.  Triplex Hybridization of siRNA with Bifacial Glycopolymer Nucleic Acid Enables Hepatocyte-Targeted Silencing.

Authors:  Xin Xia; Zhun Zhou; Chris DeSantis; John J Rossi; Dennis Bong
Journal:  ACS Chem Biol       Date:  2019-06-11       Impact factor: 5.100

4.  Duplex Stem Replacement with bPNA+ Triplex Hybrid Stems Enables Reporting on Tertiary Interactions of Internal RNA Domains.

Authors:  Shiqin Miao; Yufeng Liang; Ila Marathe; Jie Mao; Chris DeSantis; Dennis Bong
Journal:  J Am Chem Soc       Date:  2019-05-29       Impact factor: 15.419

5.  Synthesis of Bifacial Peptide Nucleic Acids with Diketopiperazine Backbones.

Authors:  Shekaraiah Devari; Debmalya Bhunia; Dennis Bong
Journal:  Synlett       Date:  2022-04-28       Impact factor: 2.170

6.  Impact of bPNA Backbone Structural Constraints and Composition on Triplex Hybridization with DNA.

Authors:  Oliver Munyaradzi; Sarah Rundell; Dennis Bong
Journal:  Chembiochem       Date:  2022-02-26       Impact factor: 3.461

7.  Context-Sensitive Cleavage of Folded DNAs by Loop-Targeting bPNAs.

Authors:  Yufeng Liang; Shiqin Miao; Jie Mao; Chris DeSantis; Dennis Bong
Journal:  Biochemistry       Date:  2020-06-23       Impact factor: 3.162

Review 8.  Unnatural bases for recognition of noncoding nucleic acid interfaces.

Authors:  Shiqin Miao; Yufeng Liang; Sarah Rundell; Debmalya Bhunia; Shekar Devari; Oliver Munyaradzi; Dennis Bong
Journal:  Biopolymers       Date:  2020-09-24       Impact factor: 2.505

Review 9.  Functional DNA-Polymer Conjugates.

Authors:  Colette J Whitfield; Meizhou Zhang; Pia Winterwerber; Yuzhou Wu; David Y W Ng; Tanja Weil
Journal:  Chem Rev       Date:  2021-03-19       Impact factor: 60.622

10.  Screening of Minimalist Noncanonical Sites in Duplex DNA and RNA Reveals Context and Motif-Selective Binding by Fluorogenic Base Probes.

Authors:  Yufeng Liang; Shiqin Miao; Jie Mao; Shekaraiah Devari; Maricarmen Gonzalez; Dennis Bong
Journal:  Chemistry       Date:  2021-11-24       Impact factor: 5.236

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