Literature DB >> 31140963

Minimal standards for the description of new genera and species of rhizobia and agrobacteria.

Philippe M de Lajudie1, Mitchell Andrews2, Julie Ardley3, Bertrand Eardly4, Estelle Jumas-Bilak5, Nemanja Kuzmanović6, Florent Lassalle7, Kristina Lindström8, Ridha Mhamdi9, Esperanza Martínez-Romero10, Lionel Moulin11, Seyed Abdollah Mousavi8, Xavier Nesme12, Alvaro Peix13, Joanna Puławska14, Emma Steenkamp15, Tomasz Stępkowski16, Chang-Fu Tian17, Pablo Vinuesa10, Gehong Wei18, Anne Willems19, Jerri Zilli20, Peter Young21.   

Abstract

Herein the members of the Subcommittee on Taxonomy of Rhizobia and Agrobacteria of the International Committee on Systematics of Prokaryotes review recent developments in rhizobial and agrobacterial taxonomy and propose updated minimal standards for the description of new species (and genera) in these groups. The essential requirements (minimal standards) for description of a new species are (1) a genome sequence of at least the proposed type strain and (2) evidence for differentiation from other species based on genome sequence comparisons. It is also recommended that (3) genetic variation within the species is documented with sequence data from several clearly different strains and (4) phenotypic features are described, and their variation documented with data from a relevant set of representative strains. Furthermore, it is encouraged that information is provided on (5) nodulation or pathogenicity phenotypes, as appropriate, with relevant gene sequences. These guidelines supplement the current rules of general bacterial taxonomy, which require (6) a name that conforms to the International Code of Nomenclature of Prokaryotes, (7) validation of the name by publication either directly in the International Journal of Systematic and Evolutionary Microbiology or in a validation list when published elsewhere, and (8) deposition of the type strain in two international culture collections in separate countries.

Keywords:  Minimal standards for taxonomy; agrobacteria; genome-based taxonomy; rhizobia

Mesh:

Year:  2019        PMID: 31140963     DOI: 10.1099/ijsem.0.003426

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  18 in total

1.  A non-symbiotic novel species, Rhizobium populisoli sp. nov., isolated from rhizosphere soil of Populus popularis.

Authors:  Lei Shen; Jing-Ju Liu; Peng-Xiao Liu; Miao-Miao An; Xiang-Wei He; Guo-Zhu Zhao
Journal:  Arch Microbiol       Date:  2021-12-21       Impact factor: 2.552

Review 2.  The changing paradigm of rhizobial taxonomy and its systematic growth upto postgenomic technologies.

Authors:  Jina Rajkumari; Prashant Katiyar; Shrivardhan Dheeman; Piyush Pandey; Dinesh Kumar Maheshwari
Journal:  World J Microbiol Biotechnol       Date:  2022-08-26       Impact factor: 4.253

3.  Bradyrhizobium campsiandrae sp. nov., a nitrogen-fixing bacterial strain isolated from a native leguminous tree from the Amazon adapted to flooded conditions.

Authors:  Daniele Cabral Michel; Elaine Martins da Costa; Amanda Azarias Guimarães; Teotonio Soares de Carvalho; Polyane Santos de Castro Caputo; Anne Willems; Fatima Maria de Souza Moreira
Journal:  Arch Microbiol       Date:  2020-08-28       Impact factor: 2.552

Review 4.  Diazotrophs for Lowering Nitrogen Pollution Crises: Looking Deep Into the Roots.

Authors:  Asma Imran; Sughra Hakim; Mohsin Tariq; Muhammad Shoib Nawaz; Iqra Laraib; Umaira Gulzar; Muhammad Kashif Hanif; Muhammad Jawad Siddique; Mahnoor Hayat; Ahmad Fraz; Muhammad Ahmad
Journal:  Front Microbiol       Date:  2021-05-24       Impact factor: 5.640

5.  Symbiotic and Nonsymbiotic Members of the Genus Ensifer (syn. Sinorhizobium) Are Separated into Two Clades Based on Comparative Genomics and High-Throughput Phenotyping.

Authors:  Camilla Fagorzi; Alexandru Ilie; Francesca Decorosi; Lisa Cangioli; Carlo Viti; Alessio Mengoni; George C diCenzo
Journal:  Genome Biol Evol       Date:  2020-12-06       Impact factor: 3.416

6.  Defining the Rhizobium leguminosarum Species Complex.

Authors:  J Peter W Young; Sara Moeskjær; Alexey Afonin; Praveen Rahi; Marta Maluk; Euan K James; Maria Izabel A Cavassim; M Harun-Or Rashid; Aregu Amsalu Aserse; Benjamin J Perry; En Tao Wang; Encarna Velázquez; Evgeny E Andronov; Anastasia Tampakaki; José David Flores Félix; Raúl Rivas González; Sameh H Youseif; Marc Lepetit; Stéphane Boivin; Beatriz Jorrin; Gregory J Kenicer; Álvaro Peix; Michael F Hynes; Martha Helena Ramírez-Bahena; Arvind Gulati; Chang-Fu Tian
Journal:  Genes (Basel)       Date:  2021-01-18       Impact factor: 4.096

7.  Genetic characterization at the species and symbiovar level of indigenous rhizobial isolates nodulating Phaseolus vulgaris in Greece.

Authors:  Evdoxia Efstathiadou; Georgia Ntatsi; Dimitrios Savvas; Anastasia P Tampakaki
Journal:  Sci Rep       Date:  2021-04-21       Impact factor: 4.379

8.  Phylogenetic distribution and evolutionary dynamics of nod and T3SS genes in the genus Bradyrhizobium.

Authors:  Albin Teulet; Djamel Gully; Zoe Rouy; Alicia Camuel; Ralf Koebnik; Eric Giraud; Florent Lassalle
Journal:  Microb Genom       Date:  2020-08-12

Review 9.  Effectiveness of nitrogen fixation in rhizobia.

Authors:  Kristina Lindström; Seyed Abdollah Mousavi
Journal:  Microb Biotechnol       Date:  2019-12-04       Impact factor: 5.813

10.  Symbiosis islands of Loteae-nodulating Mesorhizobium comprise three radiating lineages with concordant nod gene complements and nodulation host-range groupings.

Authors:  Benjamin J Perry; John T Sullivan; Elena Colombi; Riley J T Murphy; Joshua P Ramsay; Clive W Ronson
Journal:  Microb Genom       Date:  2020-08-26
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