Literature DB >> 31138650

Productive reorientation of a bound oxime reactivator revealed in room temperature X-ray structures of native and VX-inhibited human acetylcholinesterase.

Oksana Gerlits1, Xiaotian Kong2, Xiaolin Cheng2, Troy Wymore3, Donald K Blumenthal4, Palmer Taylor5, Zoran Radić5, Andrey Kovalevsky6.   

Abstract

Exposure to organophosphorus compounds (OPs) may be fatal if untreated, and a clear and present danger posed by nerve agent OPs has become palpable in recent years. OPs inactivate acetylcholinesterase (AChE) by covalently modifying its catalytic serine. Inhibited AChE cannot hydrolyze the neurotransmitter acetylcholine leading to its build-up at the cholinergic synapses and creating an acute cholinergic crisis. Current antidotes, including oxime reactivators that attack the OP-AChE conjugate to free the active enzyme, are inefficient. Better reactivators are sought, but their design is hampered by a conformationally rigid portrait of AChE extracted exclusively from 100K X-ray crystallography and scarcity of structural knowledge on human AChE (hAChE). Here, we present room temperature X-ray structures of native and VX-phosphonylated hAChE with an imidazole-based oxime reactivator, RS-170B. We discovered that inhibition with VX triggers substantial conformational changes in bound RS-170B from a "nonproductive" pose (the reactive aldoxime group points away from the VX-bound serine) in the reactivator-only complex to a "semi-productive" orientation in the VX-modified complex. This observation, supported by concurrent molecular simulations, suggested that the narrow active-site gorge of hAChE may be significantly more dynamic than previously thought, allowing RS-170B to reorient inside the gorge. Furthermore, we found that small molecules can bind in the choline-binding site hindering approach to the phosphorous of VX-bound serine. Our results provide structural and mechanistic perspectives on the reactivation of OP-inhibited hAChE and demonstrate that structural studies at physiologically relevant temperatures can deliver previously overlooked insights applicable for designing next-generation antidotes.
© 2019 Gerlits et al .

Entities:  

Keywords:  RS-170B; VX-inhibition; X-ray crystallography; acetylcholinesterase (AChE); molecular modeling; oxime reactivator; protein chemical modification; reactivation mechanism; structure-function

Mesh:

Substances:

Year:  2019        PMID: 31138650      PMCID: PMC6615692          DOI: 10.1074/jbc.RA119.008725

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  63 in total

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Journal:  Acc Chem Res       Date:  2000-12       Impact factor: 22.384

2.  A new and rapid colorimetric determination of acetylcholinesterase activity.

Authors:  G L ELLMAN; K D COURTNEY; V ANDRES; R M FEATHER-STONE
Journal:  Biochem Pharmacol       Date:  1961-07       Impact factor: 5.858

3.  Development and testing of a general amber force field.

Authors:  Junmei Wang; Romain M Wolf; James W Caldwell; Peter A Kollman; David A Case
Journal:  J Comput Chem       Date:  2004-07-15       Impact factor: 3.376

4.  The CCP4 suite: programs for protein crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

5.  Potential energy functions for atomic-level simulations of water and organic and biomolecular systems.

Authors:  William L Jorgensen; Julian Tirado-Rives
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

6.  The Amber biomolecular simulation programs.

Authors:  David A Case; Thomas E Cheatham; Tom Darden; Holger Gohlke; Ray Luo; Kenneth M Merz; Alexey Onufriev; Carlos Simmerling; Bing Wang; Robert J Woods
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

7.  Crystal structures of aged phosphonylated acetylcholinesterase: nerve agent reaction products at the atomic level.

Authors:  C B Millard; G Kryger; A Ordentlich; H M Greenblatt; M Harel; M L Raves; Y Segall; D Barak; A Shafferman; I Silman; J L Sussman
Journal:  Biochemistry       Date:  1999-06-01       Impact factor: 3.162

8.  Reactivation kinetics of acetylcholinesterase from different species inhibited by highly toxic organophosphates.

Authors:  F Worek; G Reiter; P Eyer; L Szinicz
Journal:  Arch Toxicol       Date:  2002-07-12       Impact factor: 5.153

9.  Quantitation of metabolites of the nerve agents sarin, soman, cyclohexylsarin, VX, and Russian VX in human urine using isotope-dilution gas chromatography-tandem mass spectrometry.

Authors:  John R Barr; W J Driskell; Linda S Aston; Rodolfo A Martinez
Journal:  J Anal Toxicol       Date:  2004 Jul-Aug       Impact factor: 3.367

10.  Structure of a complex of the potent and specific inhibitor BW284C51 with Torpedo californica acetylcholinesterase.

Authors:  Clifford E Felder; Michal Harel; Israel Silman; Joel L Sussman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28
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  4 in total

1.  Rational design, synthesis, and evaluation of uncharged, "smart" bis-oxime antidotes of organophosphate-inhibited human acetylcholinesterase.

Authors:  Lukas Gorecki; Oksana Gerlits; Xiaotian Kong; Xiaolin Cheng; Donald K Blumenthal; Palmer Taylor; Carlo Ballatore; Andrey Kovalevsky; Zoran Radić
Journal:  J Biol Chem       Date:  2020-02-04       Impact factor: 5.157

2.  Molecular Modeling Studies on the Multistep Reactivation Process of Organophosphate-Inhibited Acetylcholinesterase and Butyrylcholinesterase.

Authors:  Jakub Jończyk; Jędrzej Kukułowicz; Kamil Łątka; Barbara Malawska; Young-Sik Jung; Kamil Musilek; Marek Bajda
Journal:  Biomolecules       Date:  2021-01-27

3.  Broad-Spectrum Antidote Discovery by Untangling the Reactivation Mechanism of Nerve-Agent-Inhibited Acetylcholinesterase.

Authors:  Cecilia Lindgren; Nina Forsgren; Norman Hoster; Christine Akfur; Elisabet Artursson; Lotta Edvinsson; Richard Svensson; Franz Worek; Fredrik Ekström; Anna Linusson
Journal:  Chemistry       Date:  2022-06-07       Impact factor: 5.020

4.  Malleability of the SARS-CoV-2 3CL Mpro Active-Site Cavity Facilitates Binding of Clinical Antivirals.

Authors:  Daniel W Kneller; Stephanie Galanie; Gwyndalyn Phillips; Hugh M O'Neill; Leighton Coates; Andrey Kovalevsky
Journal:  Structure       Date:  2020-10-23       Impact factor: 5.006

  4 in total

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