Literature DB >> 31133757

trackViewer: a Bioconductor package for interactive and integrative visualization of multi-omics data.

Jianhong Ou1, Lihua Julie Zhu2,3,4.   

Abstract

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Year:  2019        PMID： 31133757     DOI： 10.1038/s41592-019-0430-y

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  41 in total

1.  The LDLR, APOB, and PCSK9 Variants of Index Patients with Familial Hypercholesterolemia in Russia.

Authors:  Alexey Meshkov; Alexandra Ershova; Anna Kiseleva; Evgenia Zotova; Evgeniia Sotnikova; Anna Petukhova; Anastasia Zharikova; Pavel Malyshev; Tatyana Rozhkova; Anastasia Blokhina; Alena Limonova; Vasily Ramensky; Mikhail Divashuk; Zukhra Khasanova; Anna Bukaeva; Olga Kurilova; Olga Skirko; Maria Pokrovskaya; Valeriya Mikova; Ekaterina Snigir; Alexsandra Akinshina; Sergey Mitrofanov; Daria Kashtanova; Valentin Makarov; Valeriy Kukharchuk; Sergey Boytsov; Sergey Yudin; Oxana Drapkina
Journal:  Genes (Basel)       Date:  2021-01-06       Impact factor: 4.096

Review 2.  Software tools, databases and resources in metabolomics: updates from 2018 to 2019.

Authors:  Keiron O'Shea; Biswapriya B Misra
Journal:  Metabolomics       Date:  2020-03-07       Impact factor: 4.290

3.  Identification of enhancer regulatory elements that direct epicardial gene expression during zebrafish heart regeneration.

Authors:  Yingxi Cao; Yu Xia; Joseph J Balowski; Jianhong Ou; Lingyun Song; Alexias Safi; Timothy Curtis; Gregory E Crawford; Kenneth D Poss; Jingli Cao
Journal:  Development       Date:  2022-02-18       Impact factor: 6.868

4.  The Impact of Inflammation-Induced Tumor Plasticity during Myeloid Transformation.

Authors:  Anna Yeaton; Geraldine Cayanan; Iannis Aifantis; Maria Guillamot; Sanam Loghavi; Igor Dolgalev; Emmett M Leddin; Christian E Loo; Hedieh Torabifard; Deedra Nicolet; Jingjing Wang; Kate Corrigan; Varvara Paraskevopoulou; Daniel T Starczynowski; Eric Wang; Omar Abdel-Wahab; Aaron D Viny; Richard M Stone; John C Byrd; Olga A Guryanova; Rahul M Kohli; G Andrés Cisneros; Aristotelis Tsirigos; Ann-Kathrin Eisfeld
Journal:  Cancer Discov       Date:  2022-10-05       Impact factor: 38.272

Review 5.  Multi-omics integration in the age of million single-cell data.

Authors:  Zhen Miao; Benjamin D Humphreys; Andrew P McMahon; Junhyong Kim
Journal:  Nat Rev Nephrol       Date:  2021-08-20       Impact factor: 42.439

6.  Utility of Triti-Map for bulk-segregated mapping of causal genes and regulatory elements in Triticeae.

Authors:  Fei Zhao; Shilong Tian; Qiuhong Wu; Zijuan Li; Luhuan Ye; Yili Zhuang; Meiyue Wang; Yilin Xie; Shenghao Zou; Wan Teng; Yiping Tong; Dingzhong Tang; Ajay Kumar Mahato; Moussa Benhamed; Zhiyong Liu; Yijing Zhang
Journal:  Plant Commun       Date:  2022-02-18

7.  Increased Abundance of Achromobacter xylosoxidans and Bacillus cereus in Upper Airway Transcriptionally Active Microbiome of COVID-19 Mortality Patients Indicates Role of Co-Infections in Disease Severity and Outcome.

Authors:  Priti Devi; Ranjeet Maurya; Priyanka Mehta; Uzma Shamim; Aanchal Yadav; Partha Chattopadhyay; Akshay Kanakan; Kriti Khare; Janani Srinivasa Vasudevan; Shweta Sahni; Pallavi Mishra; Akansha Tyagi; Sujeet Jha; Sandeep Budhiraja; Bansidhar Tarai; Rajesh Pandey
Journal:  Microbiol Spectr       Date:  2022-05-17

8.  Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity.

Authors:  Amitesh Anand; Arjun Patel; Ke Chen; Connor A Olson; Patrick V Phaneuf; Cameron Lamoureux; Ying Hefner; Richard Szubin; Adam M Feist; Bernhard O Palsson
Journal:  Nat Commun       Date:  2022-06-27       Impact factor: 17.694

9.  Single-cell DNA amplicon sequencing reveals clonal heterogeneity and evolution in T-cell acute lymphoblastic leukemia.

Authors:  Llucia Albertí-Servera; Sofie Demeyer; Inge Govaerts; Toon Swings; Jolien De Bie; Olga Gielen; Marco Brociner; Lucienne Michaux; Johan Maertens; Anne Uyttebroeck; Kim De Keersmaecker; Nancy Boeckx; Heidi Segers; Jan Cools
Journal:  Blood       Date:  2021-02-11       Impact factor: 22.113

10.  Janus-faced EPHB4-associated disorders: novel pathogenic variants and unreported intrafamilial overlapping phenotypes.

Authors:  Kazim Ogmen; Ege Sackey; Silvia Martin-Almedina; Dionysios Grigoriadis; Christina Karapouliou; Noeline Nadarajah; Cathrine Ebbing; Jenny Lord; Rhiannon Mellis; Fanny Kortuem; Mary Beth Dinulos; Cassandra Polun; Sherri Bale; Giles Atton; Alexandra Robinson; Hallvard Reigstad; Gunnar Houge; Axel von der Wense; Wolf-Henning Becker; Steve Jeffery; Peter S Mortimer; Kristiana Gordon; Katherine S Josephs; Sarah Robart; Mark D Kilby; Stephanie Vallee; Jerome L Gorski; Maja Hempel; Siren Berland; Sahar Mansour; Pia Ostergaard
Journal:  Genet Med       Date:  2021-04-16       Impact factor: 8.822
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