| Literature DB >> 31118049 |
Yi Lu1, Xiaojun Deng2, Jiahui Chen1, Jianying Wang1, Qin Chen3, Bing Niu4.
Abstract
BACKGROUND: African swine fever (ASF) is a devastating infectious disease of pigs. ASF poses a potential threat to the world pig industry, due to the lack of vaccines and treatments. In this study, the Geographic Information System (GIS) spatial analysis was applied to analyze the distribution, dispersion of the epidemic and clustering of ASF in Poland.Entities:
Keywords: African swine fever; Latin hypercube sampling; Risk analysis; Space-time scan statistical; Standard deviation ellipse
Mesh:
Year: 2019 PMID: 31118049 PMCID: PMC6532167 DOI: 10.1186/s12917-019-1903-z
Source DB: PubMed Journal: BMC Vet Res ISSN: 1746-6148 Impact factor: 2.741
Fig. 1The outbreak of ASF in Poland and its neighboring countries, 2013–2017. The maps were generated with QGIS Version 2.18 (https://www.qgis.org/en/site/index.html) and the base map was Bing Maps from QuickMapServices
Fig. 2Risk assessment of releasing ASFV by legal export of pork and pork products from Poland
The input parameters and calculation method for each node in the model
| Notation | Definition | Parameterization | Source | Values |
|---|---|---|---|---|
| P1 | Probability of ASF infection in Poland | P1 = 1-e(−t × λ) | [ | P1 = 0.762 |
| P2 | Probability of pig surviving an ASF infection | [ | Pert (0.05, 0.2, 0.8) | |
| P3 | Probability of pigs being selected for slaughter | P3 = Vs/Vp | ||
| Vs | Pig slaughter volume (Thousand head) | [ | Pert (1344.1, 1765.3, 2465.8) | |
| Vp | Number of fattening pigs (Thousand head) | [ | Uniform (3856.6, 6490.3) | |
| P4 | Survival rate of pigs during transportation | P4 = 1-P4’ | ||
| P4’ | Mortality of pigs during transportation | [ | Pert (0.00062, 0.00107, 0.00335) | |
| P5 | Probability of infected pigs not being detected in the slaughterhouse | [ | Beta (1.34, 34.17) | |
| P6 | Probability of selecting pork and pork products carrying ASFV to be exported | Beta (α1, α2) | ||
| α1 | The quantity of potentially infected pork and pork products in Poland | α1 = QI+ 1 | ||
| α2 | The quantity of qualified swine produced in Poland | α2 = (QT-QI)-1 | ||
| QT | Total production of pork and pork products in Poland | [ | Triang (969,317, 1,955,500, 2,230,071) | |
| QI | Total amount of pork and pork products with ASFV | QI=NI × Pm × Mp | ||
| NI | Number of infected pigs | NI=Ou × To×Hp | ||
| Ou | Number of ASF undetected outbreaks before official notification | [ | Pert (1, 1.28, 6) | |
| To | Average herd size in Poland | To = Nt/Sf | ||
| Nt | Pig population in Poland | [ | Normal (16,189,857, 2,346,461) | |
| Sf | Numbers of pig farms in Poland | [ | Normal (262,690, 45,068) | |
| Hp | Intra-herd prevalence of ASF | [ | Pert (0.05, 0.15, 0.32) | |
| Pm | Probability ASF infected pig being transformed into meat | Pm = P2 × P3 × P4 × P5 | ||
| Mp | Average weight of each pig in Poland(kg) | [ | Uniform (85.9, 89.7) | |
| n | Export volume of pork and pork products in Poland (t) | [ | Triang (9633.8, 9777.9, 645,366) | |
| p | Probability of ASFV carrying pork and pork products exported from Poland | p = P1 × P6 | ||
| Pr | Probability of at least 1 t pork and pork Products carrying ASFV exported from Poland | Pr = 1-(1-p) n | ||
Fig. 3The outbreaks of AFS in Poland during 2014–2017. a: The heat map of the outbreak. The darker the area, the more serious the epidemic situation and the arrows represent the disease direction; b: The annual outbreak; c: The outbreaks in each province. The maps were generated with QGIS Version 2.18 (https://www.qgis.org/en/site/index.html) and the base map was Bing Maps from QuickMapServices
Fig. 4The SDE of the ASF outbreak in Poland in 2014–2017. n: the number of outbreaks in SDE. The maps were generated with QGIS Version 2.18 (https://www.qgis.org/en/site/index.html) and the base map was Bing Maps from QuickMapServices
The Parameters of SDE from 2014 to 2017
| Year | Center X (°) | Center Y (°) | Long axis(km) | Short axis(km) | L/S* | Rotation angle (°) |
|---|---|---|---|---|---|---|
| 2014 | 23.7686 | 53.1262 | 63.54 | 23.93 | 2.655 | 133.491 |
| 2015 | 23.7041 | 53.0793 | 110.69 | 38.11 | 2.905 | 148.155 |
| 2016 | 23.2904 | 52.5783 | 198.85 | 113.96 | 1.745 | 152.177 |
| 2017 | 22.7104 | 52.1603 | 301.50 | 255.66 | 1.179 | 99.419 |
*L/S represent the ratio of Long axis to Short axis
The characteristics of space–time permutation scan statistic results of all the clusters
| Cluster ID | No. of outbreaks | Radius (km) | Start | End | Observed cases | Expected cases | RR | LLR |
|---|---|---|---|---|---|---|---|---|
| 1 | 145 | 41.13 | 2014/2/17 | 2016/1/9 | 159 | 17.03 | 10.24 | 219.73 |
| 2 | 228 | 26.36 | 2016/8/13 | 2017/7/14 | 254 | 59.16 | 4.91 | 187.98 |
| 3 | 2 | 0 | 2017/7/24 | 2017/7/24 | 46 | 1.37 | 34.53 | 117.78 |
| 4 | 145 | 98.19 | 2017/11/24 | 2017/12/30 | 206 | 65.64 | 3.45 | 101.78 |
| 5 | 13 | 4.62 | 2017/8/17 | 2017/9/8 | 48 | 3.28 | 15.05 | 84.77 |
| 6 | 6 | 11.12 | 2017/7/27 | 2017/8/6 | 26 | 0.6 | 44.02 | 72.76 |
| 7 | 1 | 0 | 2017/9/11 | 2017/9/11 | 19 | 0.26 | 73.93 | 63.02 |
| 8 | 8 | 6.96 | 2017/7/17 | 2017/7/19 | 24 | 0.67 | 36.35 | 62.62 |
Fig. 5Geographical localization of the ASF clusters in Poland from 2014 to 2017. The maps were generated with QGIS Version 2.18 (https://www.qgis.org/en/site/ index.html) and the base map was Bing Maps from QuickMapServices
Fig. 6The probability distribution of the output value. a: The probability of releasing ASFV by legal export of pork and pork products from Poland (p); b: The probability of at least 1 t of pork and pork products carrying ASFV exported from Poland through legal channels (Pr)