| Literature DB >> 31117912 |
Mehdi Ghasemi1, Mufide Okay2, Seyhan Turk3, Ronak Naeemaee4, Ebru Guver4, Umit Y Malkan5, Salih Aksu2, Nilgun Sayinalp2, Ibrahim C Haznedaroglu2.
Abstract
INTRODUCTION: Bone marrow renin-angiotensin system(RAS) modulates acute myeloid leukaemia(AML).The aim of this study is to clarify the relationships between RAS and AML, and to show the effect of losartan and doxorubicin treatment in AML cell lines.Entities:
Keywords: AML; ANG II; AT1R; AT2R; RAS; doxorubicin; drug combination; losartan
Mesh:
Substances:
Year: 2019 PMID: 31117912 PMCID: PMC6537254 DOI: 10.1177/1470320319851310
Source DB: PubMed Journal: J Renin Angiotensin Aldosterone Syst ISSN: 1470-3203 Impact factor: 1.636
Figure 1.Cell viability assay results for HL-60 showing that losartan at the highest concentration does not induce cell death.
Figure 2.Cell viability assay results for six AML cell lines. The bars represent the IC50 values upon treatment with control (doxorubicin only) and all three different losartan concentrations. As can be seen on the graph, the first three cell lines belong to Group A and they show an increase in their sensitivity for losartan concentrations and the last three cell lines belong to Group B and show no change after treatment with three different losartan concentrations. For CESS at 10µM losartan concentration no IC50 was generated by R software.
Figure 3.AT1R expression rates. The graphs show the expression rates of AT1R of the five chosen AML cell lines from CGP published microarray database. The bars show that there is no significant difference in the expression rates of this receptor before any drug treatment.
Seven genes differentially expressed in the pathways regarding immune response, apoptosis and autophagy; 868 genes were found to be significantly differentially expressed and among them, seven genes were found in the pathways. As can be seen from the table, the largest number of genes found belong to apoptotic pathways.
| Immune response | Apoptosis | Autophagy |
|---|---|---|
| LAG3 (P-Value:0.0168859438962527) | BCL2L2 (P-Value:0.0358013451611461) | TGM2 (P-Value:0.00958713342814844) |
| CASP2 (P-Value:0.0381230629093813) | ||
| CCR8 (P-Value:0.00645072190566893) | ||
| TNFSF10 (P-Value:0.0276396070564984)/Probeset: 202687_s_at | ||
| TNFSF10 (P-Value:0.0344977098747363)/Probeset: 202688_at |
Figure 4.Clusters of differentially expressed genes with the five AML cell lines. (a) Results of 868 significantly differentially expressed genes show that each of the groups’ cell lines are clustered together. Additionally, the figures show that the genes which are up-regulated in one group are down-regulated in the other group, and vice versa. (b) The cluster of the four apoptosis genes from Table 1.
List of significant pathways in Group A (the group showing increase in sensitivity after drug treatment) vs. Group B (the group showing no effect on its behaviour after drug treatment). Cell lines of Group A pathways become more sensitive after drug (losartan + doxorubicin) treatment. These pathways are related to apoptosis, immune response and cell growth. There is no change in behaviour of the cell lines of Group B pathways on drug treatment. The cutoff point was NOM p-values ⩽ 0.05.
Group A pathways.
| Categories | name | SIZE | NOM p-val | FDR q-val |
|---|---|---|---|---|
| GO_APOPTOTIC_SIGNALING_PATHWAY | 238 | 0.020588236 | 0.105200425 | |
| GO_CELL_DEATH | 774 | 0 | 0.10735163 | |
| GO_NEGATIVE_REGULATION_OF_CELL_DEATH | 717 | 0 | 0.09858617 | |
| Apoptosis | GO_POSITIVE_REGULATION_OF_CELL_DEATH | 510 | 0.001285347 | 0.081661776 |
| GO_REGULATION_OF_APOPTOTIC_SIGNALING_PATHWAY | 301 | 0.015256588 | 0.10725033 | |
| GO_REGULATION_OF_EXTRINSIC_APOPTOTIC_SIGNALING_PATHWAY | 133 | 0.001592357 | 0.02098054 | |
| GO_RESPONSE_TO_TUMOR_NECROSIS_FACTOR | 190 | 0.00152207 | 0.013934489 | |
| GO_ACTIVATION_OF_IMMUNE_RESPONSE | 333 | 0 | 0.004737577 | |
| GO_ACTIVATION_OF_INNATE_IMMUNE_RESPONSE | 168 | 0 | 0.003467255 | |
| GO_ADAPTIVE_IMMUNE_RESPONSE | 209 | 0 | 0 | |
| GO_ADAPTIVE_IMMUNE_RESPONSE_BASED_ON_SOMATIC_RECOMBINATION_OF_IMMUNE_RECEPTORS_BUILT_FROM_IMMUNOGLOBULIN_SUPERFAMILY_DOMAINS | 106 | 0 | 0 | |
| GO_CELL_ACTIVATION_INVOLVED_IN_IMMUNE_RESPONSE | 111 | 0.040880505 | 0.09673977 | |
| GO_DEFENSE_RESPONSE | 936 | 0 | 0.013056855 | |
| GO_HUMORAL_IMMUNE_RESPONSE | 138 | 0 | 0.002018271 | |
| GO_IMMUNE_EFFECTOR_PROCESS | 364 | 0 | 0.001167334 | |
| GO_IMMUNE_RESPONSE | 824 | 0 | 9.76E-05 | |
| GO_IMMUNE_RESPONSE_REGULATING_CELL_SURFACE_RECEPTOR_SIGNALING_PATHWAY | 258 | 0.001422475 | 0.020898601 | |
| GO_INNATE_IMMUNE_RESPONSE | 446 | 0 | 3.62E-04 | |
| GO_LEUKOCYTE_MEDIATED_IMMUNITY | 129 | 0.001557632 | 0.007732814 | |
| Immune response | GO_NEGATIVE_REGULATION_OF_DEFENSE_RESPONSE | 118 | 0.047694754 | 0.10117141 |
| GO_NEGATIVE_REGULATION_OF_IMMUNE_SYSTEM_PROCESS | 295 | 0.004261364 | 0.062559985 | |
| GO_POSITIVE_REGULATION_OF_DEFENSE_RESPONSE | 296 | 0 | 0.014917386 | |
| GO_POSITIVE_REGULATION OF IMMUNE EFFECTOR PROCESS | 129 | 0.004761905 | 0.014725813 | |
| GO_POSITIVE_REGULATION OF IMMUNE RESPONSE | 438 | 0 | 0.002435664 | |
| GO_POSITIVE_REGULATION OF IMMUNE SYSTEM PROCESS | 681 | 0 | 0.019532686 | |
| GO_POSITIVE_REGULATION_OF_INNATE_IMMUNE_RESPONSE | 201 | 0 | 0.004152842 | |
| GO_REGULATION_OF_DEFENSE_RESPONSE | 612 | 0 | 0.021859257 | |
| GO_REGULATION_OF_IMMUNE_EFFECTOR_PROCESS | 341 | 0.004115226 | 0.07332308 | |
| GO_REGULATION_OF_IMMUNE_RESPONSE | 668 | 0 | 0.004055645 | |
| GO_REGULATION_OF_INNATE_IMMUNE_RESPONSE | 290 | 0 | 0.001806107 | |
| GO_REGULATION_OF_T_CELL_PROLIFERATION | 122 | 0.013595167 | 0.048995394 | |
| GO_T_CELL_RECEPTOR_SIGNALING_PATHWAY | 127 | 0.00311042 | 0.012500052 | |
| GO_CELL_PROLIFERATION | 562 | 0.006501951 | 0.11608447 | |
| GO_NEGATIVE_REGULATION_OF_CELL_PROLIFERATION | 546 | 0.031685676 | 0.18547685 | |
| Cell growth | GO_NEGATIVE_REGULATION_OF_GROWTH | 203 | 0.019374069 | 0.0793761 |
| GO_POSITIVE_REGULATION_OF_CELL_GROWTH | 117 | 0.034810126 | 0.07623337 | |
| GO_REGULATION_OF_GROWTH | 514 | 0.017948719 | 0.12467673 |
Figure 5.The frequencies of each significant category in Group A and B. The graphs show the frequency and the statistical importance of the categories defined in Table 2.
Figure 6.Part (a) belongs to Group A and shows the apoptotic signalling pathway graph, while part (b) belongs to Group B and shows the angiogenesis graph.
Figure 7.GeneMANIA-generated networks showing the interactions of all 868 significantly differentially expressed genes. (a) Co-Expression Network. (b) Gene Interaction Network. (c) Pathway Network. All of these networks indicate that these genes are highly correlated.
Group B pathways.
| Categories | name | Size | NOM p-val | FDR q-val |
|---|---|---|---|---|
| Angiogenesis | GO_ANGIOGENESIS | 252 | 0.003225806 | 0.26024547 |
| GO_BLOOD_VESSEL_MORPHOGENESIS | 315 | 0 | 0.24298245 | |
| Homeostasis | GO_HEMOSTASIS | 271 | 0.027210884 | 0.4312605 |
| GO_REGULATION_OF_BODY FLUID LEVELS | 430 | 0.025925925 | 0.5188748 | |
| GO_REGULATION_OF_WOUND_HEALING | 111 | 0.03064067 | 0.3787554 | |
| Wound healing | GO_RESPONSE_TO_WOUNDING | 479 | 0.008849558 | 0.41206074 |
| GO_WOUND_HEALING | 404 | 0 | 0.45658803 |