Literature DB >> 31117397

Genetically Encoded Protein Tyrosine Nitration in Mammalian Cells.

Joseph J Porter1, Hyo Sang Jang1, Elise M Van Fossen1, Duy P Nguyen1, Taylor S Willi1, Richard B Cooley1, Ryan A Mehl1.   

Abstract

Tyrosine nitration has served as a major biomarker for oxidative stress and is present in high abundance in over 50 disease pathologies in humans. While data mounts on specific disease pathways from specific sites of tyrosine nitration, the role of these modifications is still largely unclear. Strategies for installing site-specific tyrosine nitration in target proteins in eukaryotic cells, through routes not dependent on oxidative stress, would provide a powerful method to address the consequences of tyrosine nitration. Developed here is a Methanosarcina barkeri aminoacyl-tRNA synthetase/tRNA pair that efficiently incorporates nitrotyrosine site-specifically into proteins in mammalian cells. We demonstrate the utility of this approach to produce nitrated proteins identified in disease conditions by producing site-specific nitroTyr-containing manganese superoxide dismutase and 14-3-3 proteins in eukaryotic cells.

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Year:  2019        PMID: 31117397      PMCID: PMC7773054          DOI: 10.1021/acschembio.9b00371

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  33 in total

1.  Protein tyrosine nitration of mitochondrial carbamoyl phosphate synthetase 1 and its functional consequences.

Authors:  Hideo Takakusa; Isaac Mohar; Terrance J Kavanagh; Edward J Kelly; Rüdiger Kaspera; Sidney D Nelson
Journal:  Biochem Biophys Res Commun       Date:  2012-02-28       Impact factor: 3.575

2.  Photocontrol of tyrosine phosphorylation in mammalian cells via genetic encoding of photocaged tyrosine.

Authors:  Eyal Arbely; Jessica Torres-Kolbus; Alexander Deiters; Jason W Chin
Journal:  J Am Chem Soc       Date:  2012-07-12       Impact factor: 15.419

3.  The adaptor protein 14-3-3 binds to the calcium-sensing receptor and attenuates receptor-mediated Rho kinase signalling.

Authors:  Ajanthy Arulpragasam; Aaron L Magno; Evan Ingley; Suzanne J Brown; Arthur D Conigrave; Thomas Ratajczak; Bryan K Ward
Journal:  Biochem J       Date:  2012-02-01       Impact factor: 3.857

4.  Virus-Enabled Optimization and Delivery of the Genetic Machinery for Efficient Unnatural Amino Acid Mutagenesis in Mammalian Cells and Tissues.

Authors:  Yunan Zheng; Tommy L Lewis; Peter Igo; Franck Polleux; Abhishek Chatterjee
Journal:  ACS Synth Biol       Date:  2016-08-09       Impact factor: 5.110

5.  Identification of a denitrase activity against calmodulin in activated macrophages using high-field liquid chromatography--FTICR mass spectrometry.

Authors:  Heather S Smallwood; Natacha M Lourette; Curt B Boschek; Diana J Bigelow; Richard D Smith; Ljiljana Pasa-Tolić; Thomas C Squier
Journal:  Biochemistry       Date:  2007-08-21       Impact factor: 3.162

6.  Nitration of tyrosine 247 inhibits protein kinase G-1α activity by attenuating cyclic guanosine monophosphate binding.

Authors:  Saurabh Aggarwal; Christine M Gross; Ruslan Rafikov; Sanjiv Kumar; Jeffrey R Fineman; Britta Ludewig; Danny Jonigk; Stephen M Black
Journal:  J Biol Chem       Date:  2014-01-27       Impact factor: 5.157

7.  Mitochondrial superoxide dismutase SOD2, but not cytosolic SOD1, plays a critical role in protection against glutamate-induced oxidative stress and cell death in HT22 neuronal cells.

Authors:  Masayuki Fukui; Bao Ting Zhu
Journal:  Free Radic Biol Med       Date:  2010-01-11       Impact factor: 7.376

8.  Genetically encoding protein oxidative damage.

Authors:  Heinz Neumann; Jennifer L Hazen; John Weinstein; Ryan A Mehl; Jason W Chin
Journal:  J Am Chem Soc       Date:  2008-03-06       Impact factor: 15.419

Review 9.  The 14-3-3 proteins: integrators of diverse signaling cues that impact cell fate and cancer development.

Authors:  Deborah K Morrison
Journal:  Trends Cell Biol       Date:  2008-11-20       Impact factor: 20.808

10.  ANSID: A Solid-Phase Proteomic Approach for Identification and Relative Quantification of Aromatic Nitration Sites.

Authors:  Tal Nuriel; Julia Whitehouse; Yuliang Ma; Emily J Mercer; Neil Brown; Steven S Gross
Journal:  Front Chem       Date:  2016-01-07       Impact factor: 5.221

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  9 in total

1.  Overcoming Near-Cognate Suppression in a Release Factor 1-Deficient Host with an Improved Nitro-Tyrosine tRNA Synthetase.

Authors:  Jenna N Beyer; Parisa Hosseinzadeh; Ilana Gottfried-Lee; Elise M Van Fossen; Phillip Zhu; Riley M Bednar; P Andrew Karplus; Ryan A Mehl; Richard B Cooley
Journal:  J Mol Biol       Date:  2020-06-19       Impact factor: 5.469

2.  Efficient Site-Specific Prokaryotic and Eukaryotic Incorporation of Halotyrosine Amino Acids into Proteins.

Authors:  Hyo Sang Jang; Xiaodong Gu; Richard B Cooley; Joseph J Porter; Rachel L Henson; Taylor Willi; Joseph A DiDonato; Stanley L Hazen; Ryan A Mehl
Journal:  ACS Chem Biol       Date:  2020-02-10       Impact factor: 5.100

3.  Photosynthetic reaction center variants made via genetic code expansion show Tyr at M210 tunes the initial electron transfer mechanism.

Authors:  Jared Bryce Weaver; Chi-Yun Lin; Kaitlyn M Faries; Irimpan I Mathews; Silvia Russi; Dewey Holten; Christine Kirmaier; Steven G Boxer
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-21       Impact factor: 12.779

Review 4.  Chemogenetic and optogenetic control of post-translational modifications through genetic code expansion.

Authors:  Wenyuan Zhou; Alexander Deiters
Journal:  Curr Opin Chem Biol       Date:  2021-04-09       Impact factor: 8.972

5.  The Relationship between the Concentration of Salivary Tyrosine and Antioxidants in Patients with Oral Lichen Planus.

Authors:  Dagmara Darczuk; Wirginia Krzyściak; Beata Bystrowska; Barbara Kęsek; Dorota Kościelniak; Maria Chomyszyn-Gajewska; Tomasz Kaczmarzyk
Journal:  Oxid Med Cell Longev       Date:  2019-11-29       Impact factor: 6.543

6.  Synthesis and Evaluation of Novel Ring-Strained Noncanonical Amino Acids for Residue-Specific Bioorthogonal Reactions in Living Cells.

Authors:  Christopher D Reinkemeier; Christine Koehler; Paul F Sauter; Nataliia V Shymanska; Cecile Echalier; Anna Rutkowska; David W Will; Carsten Schultz; Edward A Lemke
Journal:  Chemistry       Date:  2021-03-04       Impact factor: 5.236

7.  Genetic encoding of a highly photostable, long lifetime fluorescent amino acid for imaging in mammalian cells.

Authors:  Chloe M Jones; D Miklos Robkis; Robert J Blizzard; Mika Munari; Yarra Venkatesh; Tiberiu S Mihaila; Alex J Eddins; Ryan A Mehl; William N Zagotta; Sharona E Gordon; E James Petersson
Journal:  Chem Sci       Date:  2021-08-03       Impact factor: 9.969

8.  Creating a Selective Nanobody Against 3-Nitrotyrosine Containing Proteins.

Authors:  Elise M Van Fossen; Sonia Grutzius; Carl E Ruby; Dan V Mourich; Chris Cebra; Shay Bracha; P Andrew Karplus; Richard B Cooley; Ryan A Mehl
Journal:  Front Chem       Date:  2022-02-21       Impact factor: 5.221

9.  Halogenation of tyrosine perturbs large-scale protein self-organization.

Authors:  Huan Sun; Haiyang Jia; Olivia Kendall; Jovan Dragelj; Vladimir Kubyshkin; Tobias Baumann; Maria-Andrea Mroginski; Petra Schwille; Nediljko Budisa
Journal:  Nat Commun       Date:  2022-08-17       Impact factor: 17.694

  9 in total

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