Literature DB >> 31113305

Multi-Input, Multi-Output Neuronal Mode Network Approach to Modeling the Encoding Dynamics and Functional Connectivity of Neural Systems.

Kunling Geng1, Dae C Shin2, Dong Song3, Robert E Hampson4, Samuel A Deadwyler5, Theodore W Berger6, Vasilis Z Marmarelis7.   

Abstract

This letter proposes a novel method, multi-input, multi-output neuronal mode network (MIMO-NMN), for modeling encoding dynamics and functional connectivity in neural ensembles such as the hippocampus. Compared with conventional approaches such as the Volterra-Wiener model, linear-nonlinear-cascade (LNC) model, and generalized linear model (GLM), the NMN has several advantages in terms of estimation accuracy, model interpretation, and functional connectivity analysis. We point out the limitations of current neural spike modeling methods, especially the estimation biases caused by the imbalanced class problem when the number of zeros is significantly larger than ones in the spike data. We use synthetic data to test the performance of NMN with a comparison of the traditional methods, and the results indicate the NMN approach could reduce the imbalanced class problem and achieve better predictions. Subsequently, we apply the MIMO-NMN method to analyze data from the human hippocampus. The results indicate that the MIMO-NMN method is a promising approach to modeling neural dynamics and analyzing functional connectivity of multi-neuronal data.

Entities:  

Mesh:

Year:  2019        PMID: 31113305      PMCID: PMC8035906          DOI: 10.1162/neco_a_01204

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  43 in total

1.  Correlations without synchrony

Authors: 
Journal:  Neural Comput       Date:  1999-10-01       Impact factor: 2.026

2.  Maximum likelihood estimation of cascade point-process neural encoding models.

Authors:  Liam Paninski
Journal:  Network       Date:  2004-11       Impact factor: 1.273

3.  Nonlinear dynamic modeling of spike train transformations for hippocampal-cortical prostheses.

Authors:  Dong Song; Rosa H M Chan; Vasilis Z Marmarelis; Robert E Hampson; Sam A Deadwyler; Theodore W Berger
Journal:  IEEE Trans Biomed Eng       Date:  2007-06       Impact factor: 4.538

4.  Dangers and uses of cross-correlation in analyzing time series in perception, performance, movement, and neuroscience: The importance of constructing transfer function autoregressive models.

Authors:  Roger T Dean; William T M Dunsmuir
Journal:  Behav Res Methods       Date:  2016-06

5.  Model-based asessment of an in-vivo predictive relationship from CA1 to CA3 in the rodent hippocampus.

Authors:  Roman A Sandler; Dong Song; Robert E Hampson; Sam A Deadwyler; Theodore W Berger; Vasilis Z Marmarelis
Journal:  J Comput Neurosci       Date:  2014-09-27       Impact factor: 1.621

6.  Neuronal spike trains and stochastic point processes. II. Simultaneous spike trains.

Authors:  D H Perkel; G L Gerstein; G P Moore
Journal:  Biophys J       Date:  1967-07       Impact factor: 4.033

7.  Modeling of neural systems by use of neuronal modes.

Authors:  V Z Marmarelis; M E Orme
Journal:  IEEE Trans Biomed Eng       Date:  1993-11       Impact factor: 4.538

8.  The Neurobiological Basis of Cognition: Identification by Multi-Input, Multioutput Nonlinear Dynamic Modeling: A method is proposed for measuring and modeling human long-term memory formation by mathematical analysis and computer simulation of nerve-cell dynamics.

Authors:  Theodore W Berger; Dong Song; Rosa H M Chan; Vasilis Z Marmarelis
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2010-03-04       Impact factor: 10.961

9.  Nonlinear modeling of causal interrelationships in neuronal ensembles.

Authors:  Theodoros P Zanos; Spiros H Courellis; Theodore W Berger; Robert E Hampson; Sam A Deadwyler; Vasilis Z Marmarelis
Journal:  IEEE Trans Neural Syst Rehabil Eng       Date:  2008-08       Impact factor: 3.802

10.  Developing a hippocampal neural prosthetic to facilitate human memory encoding and recall.

Authors:  Robert E Hampson; Dong Song; Brian S Robinson; Dustin Fetterhoff; Alexander S Dakos; Brent M Roeder; Xiwei She; Robert T Wicks; Mark R Witcher; Daniel E Couture; Adrian W Laxton; Heidi Munger-Clary; Gautam Popli; Myriam J Sollman; Christopher T Whitlow; Vasilis Z Marmarelis; Theodore W Berger; Sam A Deadwyler
Journal:  J Neural Eng       Date:  2018-03-28       Impact factor: 5.379

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