Literature DB >> 31105011

Multi-level Modulation of Light Signaling by GIGANTEA Regulates Both the Output and Pace of the Circadian Clock.

Maria A Nohales1, Wanlu Liu2, Tomas Duffy1, Kazunari Nozue3, Mariko Sawa4, Jose L Pruneda-Paz4, Julin N Maloof3, Steven E Jacobsen5, Steve A Kay6.   

Abstract

Integration of environmental signals with endogenous biological processes is essential for organisms to thrive in their natural environment. Being entrained by periodic environmental changes, the circadian clock incorporates external information to coordinate physiological processes, phasing them to the optimal time of the day and year. Here, we present a pivotal role for the clock component GIGANTEA (GI) as a genome-wide regulator of transcriptional networks mediating growth and adaptive processes in plants. We provide mechanistic details on how GI integrates endogenous timing with light signaling pathways through the global modulation of PHYTOCHROME-INTERACTING FACTORs (PIFs). Gating of the activity of these transcriptional regulators by GI directly affects a wide array of output rhythms, including photoperiodic growth. Furthermore, we uncover a role for PIFs in mediating light input to the circadian oscillator and show how their regulation by GI is required to set the pace of the clock in response to light-dark cycles.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Arabidopsis; GIGANTEA; circadian clock; clock synchronization; light input; light signaling; output; transcriptional networks

Mesh:

Substances:

Year:  2019        PMID: 31105011      PMCID: PMC6597437          DOI: 10.1016/j.devcel.2019.04.030

Source DB:  PubMed          Journal:  Dev Cell        ISSN: 1534-5807            Impact factor:   12.270


  84 in total

1.  Phytochrome-imposed oscillations in PIF3 protein abundance regulate hypocotyl growth under diurnal light/dark conditions in Arabidopsis.

Authors:  Judit Soy; Pablo Leivar; Nahuel González-Schain; Maria Sentandreu; Salomé Prat; Peter H Quail; Elena Monte
Journal:  Plant J       Date:  2012-06-11       Impact factor: 6.417

Review 2.  Shedding light on integrative GA signaling.

Authors:  Hao Xu; Qian Liu; Tao Yao; Xiangdong Fu
Journal:  Curr Opin Plant Biol       Date:  2014-07-25       Impact factor: 7.834

Review 3.  PIFs: systems integrators in plant development.

Authors:  Pablo Leivar; Elena Monte
Journal:  Plant Cell       Date:  2014-01-30       Impact factor: 11.277

4.  FKF1 and GIGANTEA complex formation is required for day-length measurement in Arabidopsis.

Authors:  Mariko Sawa; Dmitri A Nusinow; Steve A Kay; Takato Imaizumi
Journal:  Science       Date:  2007-09-13       Impact factor: 47.728

5.  ELF4 regulates GIGANTEA chromatin access through subnuclear sequestration.

Authors:  Yumi Kim; Junhyun Lim; Miji Yeom; Hyunmin Kim; Jeongsik Kim; Lei Wang; Woe Yeon Kim; David E Somers; Hong Gil Nam
Journal:  Cell Rep       Date:  2013-03-21       Impact factor: 9.423

6.  A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock.

Authors:  Jose L Pruneda-Paz; Ghislain Breton; Alessia Para; Steve A Kay
Journal:  Science       Date:  2009-03-13       Impact factor: 47.728

7.  Molecular convergence of clock and photosensory pathways through PIF3-TOC1 interaction and co-occupancy of target promoters.

Authors:  Judit Soy; Pablo Leivar; Nahuel González-Schain; Guiomar Martín; Céline Diaz; Maria Sentandreu; Bassem Al-Sady; Peter H Quail; Elena Monte
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-11       Impact factor: 11.205

8.  Online period estimation and determination of rhythmicity in circadian data, using the BioDare data infrastructure.

Authors:  Anne Moore; Tomasz Zielinski; Andrew J Millar
Journal:  Methods Mol Biol       Date:  2014

9.  Strengths and limitations of period estimation methods for circadian data.

Authors:  Tomasz Zielinski; Anne M Moore; Eilidh Troup; Karen J Halliday; Andrew J Millar
Journal:  PLoS One       Date:  2014-05-08       Impact factor: 3.240

10.  DELLA-mediated PIF degradation contributes to coordination of light and gibberellin signalling in Arabidopsis.

Authors:  Kunlun Li; Renbo Yu; Liu-Min Fan; Ning Wei; Haodong Chen; Xing Wang Deng
Journal:  Nat Commun       Date:  2016-06-10       Impact factor: 14.919

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  22 in total

1.  Pseudo Response Regulators Regulate Photoperiodic Hypocotyl Growth by Repressing PIF4/5 Transcription.

Authors:  Na Li; Yuanyuan Zhang; Yuqing He; Yan Wang; Lei Wang
Journal:  Plant Physiol       Date:  2020-03-12       Impact factor: 8.340

2.  Synchronization of photoperiod and temperature signals during plant thermomorphogenesis.

Authors:  Young-Joon Park; June-Hee Lee; Jae Young Kim; Chung-Mo Park
Journal:  Plant Signal Behav       Date:  2020-03-12

3.  It's a matter of time: the role of transcriptional regulation in the circadian clock-pathogen crosstalk in plants.

Authors:  María José de Leone; C Esteban Hernando; Santiago Mora-García; Marcelo J Yanovsky
Journal:  Transcription       Date:  2020-09-16

Review 4.  The biology of time: dynamic responses of cell types to developmental, circadian and environmental cues.

Authors:  Joseph Swift; Kathleen Greenham; Joseph R Ecker; Gloria M Coruzzi; C Robertson McClung
Journal:  Plant J       Date:  2021-12-06       Impact factor: 7.091

5.  Simple Nuclei Preparation and Co-immunoprecipitation Procedures for Studying Protein Abundance and Interactions in Plant Circadian Time Courses.

Authors:  Akane Kubota; Young Hun Song; Takato Imaizumi
Journal:  Methods Mol Biol       Date:  2022

Review 6.  Light Perception: A Matter of Time.

Authors:  Sabrina E Sanchez; Matias L Rugnone; Steve A Kay
Journal:  Mol Plant       Date:  2020-02-14       Impact factor: 13.164

7.  Leaf Transcriptome and Weight Gene Co-expression Network Analysis Uncovers Genes Associated with Photosynthetic Efficiency in Camellia oleifera.

Authors:  Zhilong He; Caixia Liu; Xiangnan Wang; Rui Wang; Yun Tian; Yongzhong Chen
Journal:  Biochem Genet       Date:  2020-10-10       Impact factor: 1.890

8.  TOC1 clock protein phosphorylation controls complex formation with NF-YB/C to repress hypocotyl growth.

Authors:  Jiapei Yan; Shibai Li; Yeon Jeong Kim; Qingning Zeng; Amandine Radziejwoski; Lei Wang; Yuko Nomura; Hirofumi Nakagami; David E Somers
Journal:  EMBO J       Date:  2021-11-02       Impact factor: 11.598

9.  The Response of COL and FT Homologues to Photoperiodic Regulation in Carrot (Daucus carota L.).

Authors:  Lijie Liu; Chenggang Ou; Shumin Chen; Qi Shen; Bo Liu; Min Li; Zhiwei Zhao; Xiaoping Kong; Xiangping Yan; Feiyun Zhuang
Journal:  Sci Rep       Date:  2020-06-19       Impact factor: 4.379

Review 10.  Circadian Regulation of the Plant Transcriptome Under Natural Conditions.

Authors:  Paige E Panter; Tomoaki Muranaka; David Cuitun-Coronado; Calum A Graham; Aline Yochikawa; Hiroshi Kudoh; Antony N Dodd
Journal:  Front Genet       Date:  2019-11-29       Impact factor: 4.599

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