Literature DB >> 31104601

Analysing livestock network data for infectious disease control: an argument for routine data collection in emerging economies.

G L Chaters1, P C D Johnson1, S Cleaveland1, J Crispell2, W A de Glanville1, T Doherty3, L Matthews1, S Mohr1, O M Nyasebwa4, G Rossi3, L C M Salvador3,5,6, E Swai4, R R Kao3.   

Abstract

Livestock movements are an important mechanism of infectious disease transmission. Where these are well recorded, network analysis tools have been used to successfully identify system properties, highlight vulnerabilities to transmission, and inform targeted surveillance and control. Here we highlight the main uses of network properties in understanding livestock disease epidemiology and discuss statistical approaches to infer network characteristics from biased or fragmented datasets. We use a 'hurdle model' approach that predicts (i) the probability of movement and (ii) the number of livestock moved to generate synthetic 'complete' networks of movements between administrative wards, exploiting routinely collected government movement permit data from northern Tanzania. We demonstrate that this model captures a significant amount of the observed variation. Combining the cattle movement network with a spatial between-ward contact layer, we create a multiplex, over which we simulated the spread of 'fast' ( R0 = 3) and 'slow' ( R0 = 1.5) pathogens, and assess the effects of random versus targeted disease control interventions (vaccination and movement ban). The targeted interventions substantially outperform those randomly implemented for both fast and slow pathogens. Our findings provide motivation to encourage routine collection and centralization of movement data to construct representative networks. This article is part of the theme issue 'Modelling infectious disease outbreaks in humans, animals and plants: epidemic forecasting and control'. This theme issue is linked with the earlier issue 'Modelling infectious disease outbreaks in humans, animals and plants: approaches and important themes'.

Entities:  

Keywords:  Tanzania; centrality measures; livestock networks; network analysis; targeted interventions; zoonoses

Mesh:

Year:  2019        PMID: 31104601      PMCID: PMC6558568          DOI: 10.1098/rstb.2018.0264

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  133 in total

1.  Introduction to network analysis and its implications for animal disease modelling.

Authors:  C Dubé; C Ribble; D Kelton; B McNab
Journal:  Rev Sci Tech       Date:  2011-08       Impact factor: 1.181

2.  Modeling bursts and heavy tails in human dynamics.

Authors:  Alexei Vázquez; João Gama Oliveira; Zoltán Dezsö; Kwang-Il Goh; Imre Kondor; Albert-László Barabási
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-03-24

3.  The scaling laws of human travel.

Authors:  D Brockmann; L Hufnagel; T Geisel
Journal:  Nature       Date:  2006-01-26       Impact factor: 49.962

4.  Percolation of a general network of networks.

Authors:  Jianxi Gao; Sergey V Buldyrev; H Eugene Stanley; Xiaoming Xu; Shlomo Havlin
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2013-12-20

5.  Branching dynamics of viral information spreading.

Authors:  José Luis Iribarren; Esteban Moro
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-10-31

6.  Network analysis of cattle movements in Uruguay: Quantifying heterogeneity for risk-based disease surveillance and control.

Authors:  Kimberly L VanderWaal; Catalina Picasso; Eva A Enns; Meggan E Craft; Julio Alvarez; Federico Fernandez; Andres Gil; Andres Perez; Scott Wells
Journal:  Prev Vet Med       Date:  2015-12-10       Impact factor: 2.670

7.  Ebola cases and health system demand in Liberia.

Authors:  John M Drake; RajReni B Kaul; Laura W Alexander; Suzanne M O'Regan; Andrew M Kramer; J Tomlin Pulliam; Matthew J Ferrari; Andrew W Park
Journal:  PLoS Biol       Date:  2015-01-13       Impact factor: 8.029

8.  A study of Rift Valley fever virus in Morogoro and Arusha regions of Tanzania - serology and farmers' perceptions.

Authors:  Jonas J Wensman; Johanna Lindahl; Nica Wachtmeister; Emeli Torsson; Paul Gwakisa; Christopher Kasanga; Gerald Misinzo
Journal:  Infect Ecol Epidemiol       Date:  2015-11-18

9.  Cattle movements and trypanosomes: restocking efforts and the spread of Trypanosoma brucei rhodesiense sleeping sickness in post-conflict Uganda.

Authors:  Richard Selby; Kevin Bardosh; Kim Picozzi; Charles Waiswa; Susan C Welburn
Journal:  Parasit Vectors       Date:  2013-09-27       Impact factor: 3.876

10.  Integrating serological and genetic data to quantify cross-species transmission: brucellosis as a case study.

Authors:  Mafalda Viana; Gabriel M Shirima; Kunda S John; Julie Fitzpatrick; Rudovick R Kazwala; Joram J Buza; Sarah Cleaveland; Daniel T Haydon; Jo E B Halliday
Journal:  Parasitology       Date:  2016-03-03       Impact factor: 3.234

View more
  9 in total

1.  Preface to theme issue 'Modelling infectious disease outbreaks in humans, animals and plants: epidemic forecasting and control'.

Authors:  R N Thompson; Ellen Brooks-Pollock
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-07-08       Impact factor: 6.237

2.  Detection, forecasting and control of infectious disease epidemics: modelling outbreaks in humans, animals and plants.

Authors:  Robin N Thompson; Ellen Brooks-Pollock
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-06-24       Impact factor: 6.237

3.  Animal movement in a pastoralist population in the Maasai Mara Ecosystem in Kenya and implications for pathogen spread and control.

Authors:  George P Omondi; Vincent Obanda; Kimberly VanderWaal; John Deen; Dominic A Travis
Journal:  Prev Vet Med       Date:  2021-01-05       Impact factor: 2.670

4.  Socially vs. Privately Optimal Control of Livestock Diseases: A Case for Integration of Epidemiology and Economics.

Authors:  Ângelo J Mendes; Daniel T Haydon; Emma McIntosh; Nick Hanley; Jo E B Halliday
Journal:  Front Vet Sci       Date:  2020-11-25

5.  Investigating the transmission risk of infectious disease outbreaks through the Aotearoa Co-incidence Network (ACN): a population-based study.

Authors:  S M Turnbull; M Hobbs; L Gray; E P Harvey; W M L Scarrold; D R J O'Neale
Journal:  Lancet Reg Health West Pac       Date:  2022-01-01

6.  Multiple species animal movements: network properties, disease dynamics and the impact of targeted control actions.

Authors:  Nicolas C Cardenas; Abagael L Sykes; Francisco P N Lopes; Gustavo Machado
Journal:  Vet Res       Date:  2022-02-22       Impact factor: 3.683

7.  Identifying Important Nodes in Complex Networks Based on Node Propagation Entropy.

Authors:  Yong Yu; Biao Zhou; Linjie Chen; Tao Gao; Jinzhuo Liu
Journal:  Entropy (Basel)       Date:  2022-02-14       Impact factor: 2.524

8.  Progressive Area Elimination of Bovine Brucellosis, 2013-2018, in Gauteng Province, South Africa: Evaluation Using Laboratory Test Reports.

Authors:  Krpasha Govindasamy; Eric M C Etter; Peter Geertsma; Peter N Thompson
Journal:  Pathogens       Date:  2021-12-09

9.  Peste des petits ruminants Virus Transmission Scaling and Husbandry Practices That Contribute to Increased Transmission Risk: An Investigation among Sheep, Goats, and Cattle in Northern Tanzania.

Authors:  Catherine M Herzog; William A de Glanville; Brian J Willett; Isabella M Cattadori; Vivek Kapur; Peter J Hudson; Joram Buza; Emmanuel S Swai; Sarah Cleaveland; Ottar N Bjørnstad
Journal:  Viruses       Date:  2020-08-24       Impact factor: 5.818

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.