| Literature DB >> 31104063 |
Yong Zhu1, Shunan Li2, Yao Sun3, Jiamin Wu3, Zichao Xiong3, Tianbo Jin3, Haiyu Jia4, Xuejun Yang1.
Abstract
BACKGROUND The aim of this study was to assess the association of single-nucleotide polymorphisms (SNPs) in IL1R1 with the risk of lumbar disc herniation (LDH) in the Han population in northwest China. MATERIAL AND METHODS To estimate the association of IL1R1 polymorphisms with LDH risk, Agena MassARRAY was used to determine the genotypes of 498 LDH patients and 463 controls. The association between IL1R1 variants and LDH risk was examined by logistic regression analysis with adjustments for age and gender. Stratification analysis was observed between gender and age with polymorphisms of IL1R1. Haplotype construction and analysis in IL1R1 were also applied to detect the potential association. RESULTS The mutant homozygous genotype in codominant model (AA versus GG, OR=2.37, 95% CI: 1.08-5.21, P=0.001) and in recessive model (AA versus GG/GA, OR=2.82, 95% CI: 1.30-6.12, P=0.005) of rs956730 were associated with an increased LDH risk in males, while rs956730 heterozygous genotype under codominant model (AG versus GG, OR=0.65, 95% CI: 0.46-0.92, P=0.001) was a protective genotype in males. In addition, the recessive model (CT/CC versus TT, OR=3.43, 95% CI: 1.11-10.57, P=0.020) of rs10490571 was associated with an increased LDH risk among people older than 50 years of age. CONCLUSIONS This study demonstrated that genetic variants in the IL1R1 genes were associated with LDH risk in the Han population of northwestern China.Entities:
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Year: 2019 PMID: 31104063 PMCID: PMC6540620 DOI: 10.12659/MSM.913563
Source DB: PubMed Journal: Med Sci Monit ISSN: 1234-1010
Distributions of age and gender in LDH patients and controls.
| Variable | Cases | % | Controls | % | |
|---|---|---|---|---|---|
| Total | 498 | 463 | |||
| Gender | 0.413 | ||||
| Female | 200 | 40.2 | 198 | 42.8 | |
| Male | 298 | 59.8 | 265 | 57.2 | |
| Age | 0.978 | ||||
| ≤50 | 233 | 46.8 | 216 | 46.7 | |
| >50 | 265 | 53.2 | 247 | 53.3 | |
| Mean ±SD | 50.27 ± 12.53 | 50.65 ± 11.80 | |||
P<0.05 indicates statistical significance.
Basic characteristics and allele frequencies of the 5 SNPs.
| SNP_ID | Genes | Chr. | Allele (A/B) | MAF | OR (95%CI) | Regulome DB Score | Function | ||
|---|---|---|---|---|---|---|---|---|---|
| Case | Control | ||||||||
| rs10490571 | 2q12.1 | T/C | 0.186 | 0.165 | 1.15 (0.91–1.45) | 0.238 | 2b | DNAse, Proteins bound, Motifs changed, Selected eQTL hits | |
| rs12712127 | 2q12.1 | G/A | 0.234 | 0.210 | 1.15 (0.93–1.43) | 0.197 | 4 | Selected eQTL hits | |
| rs956730 | 2q12.1 | A/G | 0.258 | 0.261 | 0.98 (0.80–1.20) | 0.889 | 5 | DNAse, Motifs changed | |
| rs3917225 | 2q12.1 | G/A | 0.350 | 0.342 | 1.03 (0.86–1.25) | 0.699 | 5 | Motifs changed, Selected eQTL hits | |
| rs3917318 | 2q12.1 | G/A | 0.491 | 0.485 | 1.02 (0.86–1.22) | 0.789 | 5 | DNAse, Motifs changed | |
SNP – single nucleotide polymorphism; Chr. – chromosome; A/B – minor/major; MAF – minor allele frequency; OR – odds ratio; 95%CI – 95% confidence interval. Score 2b indicated the SNP loci is likely to affect binding; score 4 and 5 indicated minimal binding evidence. P<0.05 indicates statistical significance.
Stratified analysis between IL1R1 SNPs and gender associated with LDH risk.
| Model | Genotype | Male | Adjusted by age OR (95%CI) | Female | Adjusted by age OR (95%CI) | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Control | Case | Control | case | |||||||
| rs956730 | Codominant | GG | 139 | 176 | 1.00 | 107 | 104 | 1.00 | 0.580 | |
| AG | 116 | 95 | 75 | 84 | 1.14 (0.75–1.73) | |||||
| AA | 9 | 27 | 16 | 12 | 0.76 (0.34–1.69) | |||||
| Dominant | GG | 139 | 176 | 1.00 | 0.130 | 107 | 104 | 1.00 | 0.720 | |
| AG/AA | 125 | 122 | 0.77 (0.55–1.08) | 91 | 96 | 1.07 (0.72–1.60) | ||||
| Recessive | GG/AG | 255 | 271 | 1.00 | 182 | 188 | 1.00 | 0.400 | ||
| AA | 9 | 27 | 16 | 12 | 0.72 (0.33–1.56) | |||||
| Log-additive | --- | --- | --- | 0.98 (0.75–1.28) | 0.880 | --- | --- | 0.99 (0.72–1.36) | 0.950 | |
OR – odds ratio; CI – confidence interval. P<0.05 indicates statistical significance. Bold values indicate a significant difference.
Stratified analysis between IL1R1 SNPs and age associated with LDH risk.
| Model | Genotype | ≤50 | Adjusted by age OR (95%CI) | >50 | Adjusted by age OR (95%CI) | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Control | Case | Control | case | |||||||
| rs956730 | Codominant | CC | 153 | 157 | 1.00 | 0.700 | 170 | 182 | 1.00 | 0.054 |
| CT | 54 | 64 | 1.16 (0.76–1.77) | 73 | 69 | 0.89 (0.60–1.31) | ||||
| TT | 9 | 12 | 1.31 (0.54–3.20) | 4 | 14 | 3.31 (1.07–10.26) | ||||
| Dominant | CC | 153 | 157 | 1.00 | 0.420 | 170 | 182 | 1.00 | 0.950 | |
| CT/TT | 63 | 76 | 1.18 (0.79–1.76) | 77 | 83 | 1.01 (0.70–1.47) | ||||
| Recessive | CC/CT | 207 | 221 | 1.00 | 0.610 | 243 | 251 | 1.00 | ||
| TT | 9 | 12 | 1.26 (0.52–3.05) | 4 | 14 | |||||
| Log-additive | --- | --- | --- | 1.15 (0.83–1.60) | 0.400 | --- | --- | 1.14 (0.83–1.57) | 0.410 | |
OR – odds ratio; CI – confidence interval. P<0.05 indicates statistical significance. Bold values indicate a significant difference.
IL1R1 haplotype frequencies and the association with LDH risk.
| rs10490571 | rs12712127 | Freq | Adjusted by age and gender OR (95%CI) | |
|---|---|---|---|---|
| C | A | 0.778 | 1.00 | --- |
| T | G | 0.175 | 1.15 (0.91–1.45) | 0.230 |
| C | G | 0.047 | 1.01 (0.68–1.52) | 0.940 |
OR – odds ratio; CI – confidence interval. P<0.05 indicates statistical significance.
Figure 1Haplotype block map for part of the SNPs in the IL1R1 gene. LD is displayed by standard color schemes with bright red for very strong LD (LOD >2, D’=1), pink red (LOD >2, D’ <1) and rose pink (LOD <2, D’=1) for partial linkage, and white (LOD <2, D’ <1) for complete recombination.
IL1R1 SNP genotypes and the risk of LDH.
| Model | Genotype | Control | Case | Crude | Adjust by gender and age | |||
|---|---|---|---|---|---|---|---|---|
| OR (95%CI) | OR (95%CI) | |||||||
| rs10490571 | Codominant | CC | 323 (69.8%) | 339 (68.1%) | 1.00 | 0.160 | 1.00 | 0.160 |
| CT | 127 (27.4%) | 133 (26.7%) | 1.00 (0.75–1.33) | 1.00 (0.75–1.34) | ||||
| TT | 13 (2.8%) | 26 (5.2%) | 1.91 (0.96–3.77) | 1.90 (0.96–3.77) | ||||
| Dominant | CC | 323 (69.8%) | 339 (68.1%) | 1.00 | 0.570 | 1.00 | 0.560 | |
| CT/TT | 140 (30.2%) | 159 (31.9%) | 1.08 (0.82–1.42) | 1.09 (0.83–1.43) | ||||
| Recessive | CC/CT | 450 (97.2%) | 472 (94.8%) | 1.00 | 0.056 | 1.00 | 0.056 | |
| TT | 13 (2.8%) | 26 (5.2%) | 1.91 (0.97–3.76) | 1.90 (0.97–3.75) | ||||
| Log-additive | --- | --- | --- | 1.14 (0.91–1.44) | 0.250 | 1.15 (0.91–1.44) | 0.250 | |
| rs12712127 | Codominant | AA | 314 (68.3%) | 322 (65.0%) | 1.00 | 0.540 | 1.00 | 0.530 |
| AG | 99 (21.5%) | 114 (23%) | 1.12 (0.82–1.53) | 1.13 (0.83–1.55) | ||||
| GG | 47 (10.2%) | 59 (11.9%) | 1.22 (0.81–1.85) | 1.22 (0.81–1.84) | ||||
| Dominant | AA | 314 (68.3%) | 322 (65%) | 1.00 | 0.290 | 1.00 | 0.280 | |
| AG/GG | 146 (31.7%) | 173 (35.0%) | 1.16 (0.88–1.51) | 1.16 (0.89–1.52) | ||||
| Recessive | AA/AG | 413 (89.8%) | 436 (88.1%) | 1.00 | 0.400 | 1.00 | 0.420 | |
| GG | 47 (10.2%) | 59 (11.9%) | 1.19 (0.79–1.78) | 1.18 (0.79–1.78) | ||||
| Log-additive | --- | --- | --- | 1.11 (0.92–1.34) | 0.270 | 1.11 (0.92–1.34) | 0.260 | |
| rs956730 | Codominant | GG | 246 (53.2%) | 280 (56.2%) | 1.00 | 0.120 | 1.00 | 0.120 |
| AG | 191 (41.3%) | 179 (35.9%) | 0.82 (0.63–1.07) | 0.82 (0.63–1.08) | ||||
| AA | 25 (5.4%) | 39 (7.8%) | 1.37 (0.81–2.33) | 1.38 (0.81–2.34) | ||||
| Dominant | GG | 246 (53.2%) | 280 (56.2%) | 1 | 0.350 | 1 | 0.360 | |
| AG/AA | 216 (46.8%) | 218 (43.8%) | 0.89 (0.69–1.14) | 0.89 (0.69–1.15) | ||||
| Recessive | GG/AG | 437 (94.6%) | 459 (92.2%) | 1.00 | 0.130 | 1.00 | 0.130 | |
| AA | 25 (5.4%) | 39 (7.8%) | 1.49 (0.88–2.50) | 1.49 (0.89–2.50) | ||||
| Log-additive | --- | --- | --- | 0.99 (0.80–1.21) | 0.890 | 0.99 (0.80–1.21) | 0.900 | |
| rs3917225 | Codominant | AA | 204 (44.2%) | 219 (44.0%) | 1.00 | 0.780 | 1.00 | 0.800 |
| AG | 200 (43.3%) | 209 (42.0%) | 0.97 (0.74–1.28) | 0.98 (0.75–1.29) | ||||
| GG | 58 (12.6%) | 70 (14.1%) | 1.12 (0.76–1.67) | 1.12 (0.75–1.67) | ||||
| Dominant | AA | 204 (44.2%) | 219 (44.0%) | 1.00 | 0.960 | 1.00 | 0.930 | |
| AG/GG | 258 (55.8%) | 279 (56.0%) | 1.01 (0.78–1.30) | 1.01 (0.78–1.31) | ||||
| Recessive | AA/AG | 404 (87.5%) | 428 (85.9%) | 1.00 | 0.490 | 1.00 | 0.510 | |
| GG | 58 (12.6%) | 70 (14.1%) | 1.14 (0.78–1.66) | 1.13 (0.78–1.65) | ||||
| Log-additive | --- | --- | --- | 1.04 (0.86–1.24) | 0.710 | 1.04 (0.86–1.24) | 0.700 | |
| rs3917318 | Codominant | AA | 136 (29.4%) | 126 (25.3%) | 1.00 | 0.090 | 1.00 | 0.087 |
| AG | 204 (44.2%) | 255 (51.2%) | 1.35 (1.00–1.83) | 1.35 (1.00–1.83) | ||||
| GG | 122 (26.4%) | 117 (23.5%) | 1.04 (0.73–1.47) | 1.03 (0.73–1.47) | ||||
| Dominant | AA | 136 (29.4%) | 126 (25.3%) | 1.00 | 0.150 | 1.00 | 0.150 | |
| AG/GG | 326 (70.6%) | 372 (74.7%) | 1.23 (0.93–1.64) | 1.23 (0.93–1.64) | ||||
| Recessive | AA/AG | 340 (73.6%) | 381 (76.5%) | 1.00 | 0.300 | 1.00 | 0.290 | |
| GG | 122 (26.4%) | 117 (23.5%) | 0.86 (0.64–1.15) | 0.85 (0.64–1.14) | ||||
| Log-additive | --- | --- | --- | 1.02 (0.86–1.22) | 0.790 | 1.02 (0.86–1.22) | 0.800 | |
OR – odds ratio; CI – confidence interval. P<0.05 indicates statistical significance.
Stratified analysis between IL1R1 SNPs and gender associated with LDH risk.
| Model | Genotypes | Male | Adjusted by age OR (95%CI) | Female | Adjusted by age OR (95%CI) | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Control | Case | Control | Case | |||||||
| rs10490571 | Codominant | C/C | 193 | 198 | 1.00 | 0.230 | 130 | 141 | 1.00 | 0.047 |
| C/T | 63 | 85 | 1.31 (0.90–1.93) | 64 | 48 | 0.70 (0.45–1.09) | ||||
| T/T | 9 | 15 | 1.62 (0.69–3.80) | 4 | 11 | 2.58 (0.80–8.30) | ||||
| Dominant | C/C | 193 | 198 | 1.00 | 0.100 | 130 | 141 | 1.00 | 0.320 | |
| C/T-T/T | 72 | 100 | 1.35 (0.94–1.94) | 68 | 59 | 0.81 (0.53–1.23) | ||||
| Recessive | C/C-C/T | 256 | 283 | 1.00 | 0.330 | 194 | 189 | 1.00 | 0.060 | |
| T/T | 9 | 15 | 1.51 (0.65–3.51) | 4 | 11 | 2.87 (0.90–9.17) | ||||
| Log-additive | --- | --- | --- | 1.30 (0.96–1.75) | 0.088 | --- | --- | 0.96 (0.67–1.38) | 0.830 | |
| rs12712127 | Codominant | A/A | 186 | 189 | 1.00 | 0.180 | 128 | 133 | 1.00 | 0.730 |
| A/G | 49 | 71 | 1.43 (0.94–2.17) | 50 | 43 | 0.84 (0.52–1.35) | ||||
| G/G | 27 | 37 | 1.35 (0.79–2.30) | 20 | 22 | 1.06 (0.55–2.03) | ||||
| Dominant | A/A | 186 | 189 | 1.00 | 0.064 | 128 | 133 | 1.00 | 0.620 | |
| A/G-G/G | 76 | 108 | 1.40 (0.98–2.00) | 70 | 65 | 0.90 (0.59–1.37) | ||||
| Recessive | A/A-A/G | 235 | 260 | 1.00 | 0.430 | 178 | 176 | 1.00 | 0.760 | |
| G/G | 27 | 37 | 1.24 (0.73–2.10) | 20 | 22 | 1.11 (0.58–2.10) | ||||
| Log-additive | --- | --- | --- | 1.22 (0.96–1.56) | 0.100 | --- | --- | 0.97 (0.73–1.30) | 0.840 | |
| rs3917225 | Codominant | A/A | 126 | 126 | 1.00 | 0.410 | 78 | 93 | 1.00 | 0.310 |
| A/G | 104 | 127 | 1.22 (0.85–1.75) | 96 | 82 | 0.72 (0.47–1.10) | ||||
| G/G | 34 | 45 | 1.32 (0.80–2.20) | 24 | 25 | 0.87 (0.46–1.64) | ||||
| Dominant | A/A | 126 | 126 | 1.00 | 0.200 | 78 | 93 | 1.00 | 0.160 | |
| A/G-G/G | 138 | 172 | 1.25 (0.89–1.74) | 120 | 107 | 0.75 (0.50–1.12) | ||||
| Recessive | A/A-A/G | 230 | 253 | 1.00 | 0.450 | 174 | 175 | 1.00 | 0.930 | |
| G/G | 34 | 45 | 1.20 (0.74–1.94) | 24 | 25 | 1.03 (0.56–1.87) | ||||
| Log-additive | --- | --- | --- | 1.17 (0.92–1.48) | 0.200 | --- | --- | 0.86 (0.65–1.15) | 0.320 | |
| rs3917318 | Codominant | G/G | 76 | 68 | 1.00 | 0.150 | 61 | 46 | 1.00 | 0.200 |
| A/G | 113 | 150 | 1.48 (0.99–2.23) | 91 | 105 | 1.53 (0.95–2.46) | ||||
| A/A | 75 | 80 | 1.19 (0.76–1.88) | 46 | 49 | 1.41 (0.81–2.45) | ||||
| Dominant | G/G | 76 | 68 | 1.00 | 0.110 | 61 | 46 | 1.00 | 0.079 | |
| A/G-A/A | 188 | 230 | 1.37 (0.94–2.00) | 137 | 154 | 1.49 (0.95–2.33) | ||||
| Recessive | G/G-A/G | 189 | 218 | 1.00 | 0.670 | 152 | 151 | 1.00 | 0.780 | |
| A/A | 75 | 80 | 0.92 (0.64–1.34) | 46 | 49 | 1.07 (0.67–1.69) | ||||
| Log-additive | --- | --- | --- | 1.09 (0.87–1.36) | 0.480 | --- | --- | 1.19 (0.91–1.58) | 0.210 | |
OR – odds ratio; CI – confidence interval. P<0.05 indicates statistical significance.
Stratified analysis between IL1R1 SNPs and age associated with LDH risk.
| Model | Genotypes | ≤50 | Adjusted by age OR (95%CI) | >50 | Adjusted by age OR (95%CI) | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Control | Case | Control | Case | |||||||
| rs12712127 | Codominant | A/A | 147 | 149 | 1.00 | 0.340 | 167 | 173 | 1.00 | 0.370 |
| A/G | 36 | 52 | 1.43 (0.88–2.32) | 63 | 62 | 0.96 (0.63–1.44) | ||||
| G/G | 30 | 32 | 1.06 (0.61–1.83) | 17 | 27 | 1.54 (0.81–2.94) | ||||
| Dominant | A/A | 147 | 149 | 1.00 | 0.250 | 167 | 173 | 1.00 | 0.680 | |
| A/G-G/G | 66 | 84 | 1.26 (0.85–1.87) | 80 | 89 | 1.08 (0.75–1.57) | ||||
| Recessive | A/A-A/G | 183 | 201 | 1.00 | 0.930 | 230 | 235 | 1.00 | 0.160 | |
| G/G | 30 | 32 | 0.98 (0.57–1.67) | 17 | 27 | 1.56 (0.83–2.94) | ||||
| Log-additive | --- | --- | --- | 1.10 (0.85–1.42) | 0.480 | --- | --- | 1.13 (0.86–1.49) | 0.360 | |
| rs956730 | Codominant | G/G | 112 | 125 | 1.00 | 0.550 | 134 | 155 | 1.00 | 0.180 |
| A/G | 91 | 90 | 0.89 (0.60–1.32) | 100 | 89 | 0.77 (0.53–1.11) | ||||
| A/A | 12 | 18 | 1.36 (0.62–2.94) | 13 | 21 | 1.40 (0.68–2.91) | ||||
| Dominant | G/G | 112 | 125 | 1.00 | 0.770 | 134 | 155 | 1.00 | 0.340 | |
| A/G-A/A | 103 | 108 | 0.95 (0.65–1.37) | 113 | 110 | 0.84 (0.59–1.20) | ||||
| Recessive | G/G-A/G | 203 | 215 | 1.00 | 0.350 | 234 | 244 | 1.00 | 0.220 | |
| A/A | 12 | 18 | 1.42 (0.67–3.03) | 13 | 21 | 1.56 (0.76–3.18) | ||||
| Log-additive | --- | --- | --- | 1.02 (0.76–1.38) | 0.890 | --- | --- | 0.96 (0.73–1.27) | 0.780 | |
| rs3917225 | Codominant | A/A | 93 | 105 | 1.00 | 0.920 | 111 | 114 | 1.00 | 0.410 |
| A/G | 89 | 95 | 0.95 (0.64–1.43) | 111 | 114 | 1.01 (0.69–1.46) | ||||
| G/G | 33 | 33 | 0.89 (0.51–1.55) | 25 | 37 | 1.45 (0.82–2.57) | ||||
| Dominant | A/A | 93 | 105 | 1.00 | 0.730 | 111 | 114 | 1.00 | 0.640 | |
| A/G-G/G | 122 | 128 | 0.94 (0.64–1.36) | 136 (55.1%) | 151 | 1.09 (0.77–1.54) | ||||
| Recessive | A/A-A/G | 182 | 200 | 1.00 | 0.720 | 222 | 228 | 1.00 | 0.180 | |
| G/G | 33 | 33 | 0.91 (0.54–1.54) | 25 | 37 | 1.44 (0.84–2.48) | ||||
| Log-additive | --- | --- | --- | 0.95 (0.73–1.23) | 0.680 | --- | --- | 1.14 (0.88–1.47) | 0.320 | |
| rs3917318 | Codominant | A/A | 66 | 53 | 1.00 | 0.16 | 70 | 73 | 1.00 | 0.140 |
| A/G | 94 | 117 | 1.55 (0.98–2.43) | 110 | 138 | 1.21 (0.80–1.83) | ||||
| G/G | 56 | 63 | 1.40 (0.84–2.33) | 66 | 54 | 0.78 (0.48–1.27) | ||||
| Dominant | A/A | 66 | 53 | 1.00 | 0.064 | 70 | 73 | 1.00 | 0.810 | |
| A/G-G/G | 150 | 180 | 1.49 (0.98–2.27) | 176 | 192 | 1.05 (0.71–1.54) | ||||
| Recessive | A/A-A/G | 160 | 170 | 1.00 | 0.800 | 180 | 211 | 1.00 | 0.078 | |
| G/G | 56 | 63 | 1.06 (0.69–1.61) | 66 | 54 | 0.69 (0.46–1.04) | ||||
| Log-additive | --- | --- | --- | 1.18 (0.91–1.53) | 0.200 | --- | --- | 0.90 (0.70–1.14) | 0.370 | |
OR – odds ratio; CI – confidence interval. P<0.05 indicates statistical significance.