| Literature DB >> 31101084 |
Wen-Ping Guo1,2, Bing Zhang3, Yi-Han Wang4,5, Gang Xu4,5, Xiaoquan Wang6, Xuebing Ni7, En-Min Zhou4,5.
Abstract
BACKGROUND: Four species within Anaplasma genus are emerging zoonotic pathogens, which are transmitted by ticks and generate veterinary and public health concerns. Here, we performed a molecular survey of Anaplasma in Ankang, Northwest China.Entities:
Keywords: Anaplasma capra; Anaplasma platys-like strains; And groEL genes; China; Rhipicephalus microplus ticks; Rrs; gltA
Mesh:
Substances:
Year: 2019 PMID: 31101084 PMCID: PMC6525361 DOI: 10.1186/s12879-019-4075-3
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
Fig. 1Map with the coordinates of all seven sampling sites (★) in Ankang, Shaanxi Province, China. The maps of Ankang city and Shaanxi Province was generated using ArcGIS (version 10.0; http://www.arcgis.com/index.html) and edited using Adobe Illustrator. The map of China was obtained from http://english.freemap.jp/item/asia/china.html
Primer sequences used in this study for detection of Anaplasma species pathogenic to humans
| Pathogens | Target gene | Primer | Oligonucleotide sequences (5′- 3′) | References |
|---|---|---|---|---|
|
|
| EE1 | TCCTGGCTCAGAACGAACGCTGGCG (+) | Barlough et al. [ |
| EE2 | AGTCACTGACCCAACCTTAAATGGCTG (−) | Barlough et al. [ | ||
| SSAP2f | GCTGAATGTGGGGATAATTTAT (+) | Kawahara et al. [ | ||
| SSAP2r | ATGGCTGCTTCCTTTCGGTTA (+) | Kawahara et al. [ | ||
|
|
| GCAAGTCGAACGGACCAAATCTGT (+) | Yang et al. [ | |
| CCACGATTACTAGCGATTCCGACTTC (−) | Yang et al. [ | |||
| Ehr3 | TGCATAGGAATCTACCTAGTAG (+) | Rar et al. [ | ||
| Ehr4 | CTAGGAATTCCGCTATCCTCT (−) | Rar et al. [ | ||
|
|
| EE1 | TCCTGGCTCAGAACGAACGCTGGCG (+) | Barlough et al. [ |
| EE2 | AGTCACTGACCCAACCTTAAATGGCTG (−) | Barlough et al. [ | ||
| 297E | ACACGGTCCAGACTCCTACG (+) | Ochirkhuu et al. [ | ||
| 1144R | CTTGACATCATCCCCACCTT (−) | Ochirkhuu et al. [ | ||
|
|
| PLATYS | GATTTTTGTCGTAGCTTGCTATG (+) | Martin et al. [ |
| Ehr2 | AGTAYCGRACCAGATAGCCGC (−) | Rar et al. [ | ||
| Ehr4 | CTAGGAATTCCGCTATCCTCT (−) | Rar et al. [ |
Primer sequences designed to amplify the gltA and groEL genes in this study
| Pathogens | Target gene | Oligonucleotide sequences (5′- 3′) | Fragment |
|---|---|---|---|
|
| Pglt-F: ATGAWAGAAAAWGCTGTTTT (+) | / | |
| Pglt-R1: TCATGRTCTGCATGCATKATG (−) | |||
| Pglt-R2: CATGCATKATGAARATMGCAT (−) | |||
| Pgro-F1: TTGATCATCGCTGAAGACGT (+) | / | ||
| Pgro-F2: ACTCTCGTCTTGAACAAGCT (+) | |||
| Pgro-R: CCACTCTGTCTTTACGCTCT (−) | |||
| Pglt-F: ATGAWAGAAAAWGCTGTTTT (+) | Former | ||
| Pglt-R1: TCATGRTCTGCATGCATKATG (−) | |||
| Pglt-R2: CATGCATKATGAARATMGCAT (−) | |||
| Pglt-L-F1: GATGCWCATCCYATSGCMATGT (+) | Latter | ||
| Pglt-L-F2: CGTGMTSGCTATAGCGMAART (+) | |||
| Pglt-L-R: TCAYACCATTGDGAYRCCCAT (−) | |||
| Pgro-F-F: AAATGKCAAATACGGTWGTC (+) | Former | ||
| Pgro-F-R1: ACAACACCTTCCTCKACAGC (−) | |||
| Pgro-F-R2: CTGKCTTTRCGYTCTTTAACTTC (−) | |||
| Pgro-L-F1: GAYGGTATGCAGTTTGATCGCG (+) | Latter | ||
| Pgro-L-F2: ATGCAGTTTGATCGCGGWTATC (+) | |||
| Pgro-L-R: CAGCRAGGTCGAAYGCAATAC (−) |
Fig. 2Phylogenetic position of revealed A. platys-like strains within Anaplasma genus. a Phylogenetic trees based on the rrs gene; (b) phylogenetic trees based on the gltA gene; (c) phylogenetic trees based on the groEL gene. Numbers at each node indicate bootstrap values. All three trees were rooted by mid-point methods. The scale bar represents the number of nucleotide substitutions per site. The taxa marked by circles depict the sequences obtained in this study
The nucleotide identities of groEL gene among specific A. platys and related four lineages
| Specific | lineage 1 | lineage 2 | lineage 3 (Ca. A. camelii) | lineage 4 | |
|---|---|---|---|---|---|
| Specific | 86.4–88.6% | 92.4–93.2% | 91.5–92.8% | 84.8–86.7% | |
| lineage 1 | 84.8–86.3% | 85.0–88.9% | 87.3–90.9% | ||
| lineage 2 | – | 86.3–88.0% | |||
| lineage 3 (Ca. A. camelii) | – | ||||
| lineage 4 |
Fig. 3Phylogenetic position of A. capra within Anaplasma genus. a Phylogenetic trees based on the rrs gene; (b) phylogenetic trees based on the gltA gene; (c) phylogenetic trees based on the groEL gene. Numbers at each node indicate bootstrap values. All three trees were rooted by mid-point methods. The scale bar represents the number of nucleotide substitutions per site. The taxa marked by circles depict the sequences obtained in this study