Literature DB >> 31099415

Multidisciplinarity in Microbiome Research: A Challenge and Opportunity to Rethink Causation, Variability, and Scale.

Katherine R Amato1,2, Corinne F Maurice1,3, Karen Guillemin1,4, Tamara Giles-Vernick1,5.   

Abstract

This essay, written by a biologist, a microbial ecologist, a biological anthropologist, and an anthropologist-historian, examines tensions and translations in microbiome research on animals in the laboratory and field. The authors trace how research questions and findings in the laboratory are extrapolated into the field and vice versa, and the shifting evidentiary standards that these research settings require. Showing how complexities of microbiomes challenge traditional standards of causation, the authors contend that these challenges require new approaches to inferences used in ecology, anthropology, and history. As social scientists incorporate investigations of microbial life into their human studies, microbiome researchers venture into field settings to develop mechanistic understandings about the functions of complex microbial communities. These efforts generate new possibilities for cross-fertilizations and inference frameworks to interpret microbiome findings. Microbiome research should integrate multiple scales, levels of variability, and other disciplinary approaches to tackle questions spanning conditions from the laboratory to the field.
© 2019 WILEY Periodicals, Inc.

Entities:  

Keywords:  animal models; causation; ecology; field investigation; laboratory investigation; microbiome; social sciences

Mesh:

Year:  2019        PMID: 31099415      PMCID: PMC6756940          DOI: 10.1002/bies.201900007

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  54 in total

1.  Anthropology of microbes.

Authors:  Amber Benezra; Joseph DeStefano; Jeffrey I Gordon
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-28       Impact factor: 11.205

2.  Gut immune maturation depends on colonization with a host-specific microbiota.

Authors:  Hachung Chung; Sünje J Pamp; Jonathan A Hill; Neeraj K Surana; Sanna M Edelman; Erin B Troy; Nicola C Reading; Eduardo J Villablanca; Sen Wang; Jorge R Mora; Yoshinori Umesaki; Diane Mathis; Christophe Benoist; David A Relman; Dennis L Kasper
Journal:  Cell       Date:  2012-06-22       Impact factor: 41.582

Review 3.  Molecular Koch's postulates applied to microbial pathogenicity.

Authors:  S Falkow
Journal:  Rev Infect Dis       Date:  1988 Jul-Aug

4.  The perils and promises of microbial abundance: novel natures and model ecosystems, from artisanal cheese to alien seas.

Authors:  Heather Paxson; Stefan Helmreich
Journal:  Soc Stud Sci       Date:  2014-04       Impact factor: 3.885

5.  Helminth infection promotes colonization resistance via type 2 immunity.

Authors:  Deepshika Ramanan; Rowann Bowcutt; Soo Ching Lee; Mei San Tang; Zachary D Kurtz; Yi Ding; Kenya Honda; William C Gause; Martin J Blaser; Richard A Bonneau; Yvonne A L Lim; P'ng Loke; Ken Cadwell
Journal:  Science       Date:  2016-04-14       Impact factor: 47.728

6.  The gut microbiota appears to compensate for seasonal diet variation in the wild black howler monkey (Alouatta pigra).

Authors:  Katherine R Amato; Steven R Leigh; Angela Kent; Roderick I Mackie; Carl J Yeoman; Rebecca M Stumpf; Brenda A Wilson; Karen E Nelson; Bryan A White; Paul A Garber
Journal:  Microb Ecol       Date:  2014-12-19       Impact factor: 4.552

7.  Disease-specific alterations in the enteric virome in inflammatory bowel disease.

Authors:  Jason M Norman; Scott A Handley; Megan T Baldridge; Lindsay Droit; Catherine Y Liu; Brian C Keller; Amal Kambal; Cynthia L Monaco; Guoyan Zhao; Phillip Fleshner; Thaddeus S Stappenbeck; Dermot P B McGovern; Ali Keshavarzian; Ece A Mutlu; Jenny Sauk; Dirk Gevers; Ramnik J Xavier; David Wang; Miles Parkes; Herbert W Virgin
Journal:  Cell       Date:  2015-01-22       Impact factor: 41.582

8.  Deciphering microbial interactions and detecting keystone species with co-occurrence networks.

Authors:  David Berry; Stefanie Widder
Journal:  Front Microbiol       Date:  2014-05-20       Impact factor: 5.640

9.  The gut mycobiome of the Human Microbiome Project healthy cohort.

Authors:  Andrea K Nash; Thomas A Auchtung; Matthew C Wong; Daniel P Smith; Jonathan R Gesell; Matthew C Ross; Christopher J Stewart; Ginger A Metcalf; Donna M Muzny; Richard A Gibbs; Nadim J Ajami; Joseph F Petrosino
Journal:  Microbiome       Date:  2017-11-25       Impact factor: 14.650

10.  The enteric nervous system promotes intestinal health by constraining microbiota composition.

Authors:  Annah S Rolig; Erika K Mittge; Julia Ganz; Josh V Troll; Ellie Melancon; Travis J Wiles; Kristin Alligood; W Zac Stephens; Judith S Eisen; Karen Guillemin
Journal:  PLoS Biol       Date:  2017-02-16       Impact factor: 8.029

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  2 in total

1.  A multi-disciplinary comparison of great ape gut microbiota in a central African forest and European zoo.

Authors:  Victor Narat; Katherine R Amato; Noémie Ranger; Maud Salmona; Séverine Mercier-Delarue; Stephanie Rupp; Philippe Ambata; Richard Njouom; François Simon; Tamara Giles-Vernick; Jérôme LeGoff
Journal:  Sci Rep       Date:  2020-11-05       Impact factor: 4.379

2.  Introducing the Microbes and Social Equity Working Group: Considering the Microbial Components of Social, Environmental, and Health Justice.

Authors:  Suzanne L Ishaq; Francisco J Parada; Patricia G Wolf; Carla Y Bonilla; Megan A Carney; Amber Benezra; Emily Wissel; Michael Friedman; Kristen M DeAngelis; Jake M Robinson; Ashkaan K Fahimipour; Melissa B Manus; Laura Grieneisen; Leslie G Dietz; Ashish Pathak; Ashvini Chauhan; Sahana Kuthyar; Justin D Stewart; Mauna R Dasari; Emily Nonnamaker; Mallory Choudoir; Patrick F Horve; Naupaka B Zimmerman; Ariangela J Kozik; Katherine Weatherford Darling; Adriana L Romero-Olivares; Janani Hariharan; Nicole Farmer; Katherine A Maki; Jackie L Collier; Kieran C O'Doherty; Jeffrey Letourneau; Jeff Kline; Peter L Moses; Nicolae Morar
Journal:  mSystems       Date:  2021-07-27       Impact factor: 6.496

  2 in total

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