Literature DB >> 31096307

Next-Generation Sequencing and Emerging Technologies.

Kishore R Kumar1,2,3, Mark J Cowley1,4, Ryan L Davis1,2.   

Abstract

Genetic sequencing technologies are evolving at a rapid pace with major implications for research and clinical practice. In this review, the authors provide an updated overview of next-generation sequencing (NGS) and emerging methodologies. NGS has tremendously improved sequencing output while being more time and cost-efficient in comparison to Sanger sequencing. The authors describe short-read sequencing approaches, such as sequencing by synthesis, ion semiconductor sequencing, and nanoball sequencing. Third-generation long-read sequencing now promises to overcome many of the limitations of short-read sequencing, such as the ability to reliably resolve repeat sequences and large genomic rearrangements. By combining complementary methods with massively parallel DNA sequencing, a greater insight into the biological context of disease mechanisms is now possible. Emerging methodologies, such as advances in nanopore technology, in situ nucleic acid sequencing, and microscopy-based sequencing, will continue the rapid evolution of this area. These new technologies hold many potential applications for hematological disorders, with the promise of precision and personalized medical care in the future. Thieme Medical Publishers 333 Seventh Avenue, New York, NY 10001, USA.

Entities:  

Mesh:

Year:  2019        PMID: 31096307     DOI: 10.1055/s-0039-1688446

Source DB:  PubMed          Journal:  Semin Thromb Hemost        ISSN: 0094-6176            Impact factor:   4.180


  41 in total

1.  Characteristics of fungal communities and the sources of mold contamination in mildewed tobacco leaves stored under different climatic conditions.

Authors:  Jiaxi Zhou; Yu Cheng; Lifei Yu; Jian Zhang; Xiao Zou
Journal:  Appl Microbiol Biotechnol       Date:  2021-12-01       Impact factor: 4.813

Review 2.  Ecosystem-specific microbiota and microbiome databases in the era of big data.

Authors:  Victor Lobanov; Angélique Gobet; Alyssa Joyce
Journal:  Environ Microbiome       Date:  2022-07-16

Review 3.  The application of big data to cardiovascular disease: paths to precision medicine.

Authors:  Jane A Leopold; Bradley A Maron; Joseph Loscalzo
Journal:  J Clin Invest       Date:  2020-01-02       Impact factor: 14.808

Review 4.  Genetic testing in dementia - utility and clinical strategies.

Authors:  Carolin A M Koriath; Joanna Kenny; Natalie S Ryan; Jonathan D Rohrer; Jonathan M Schott; Henry Houlden; Nick C Fox; Sarah J Tabrizi; Simon Mead
Journal:  Nat Rev Neurol       Date:  2020-11-09       Impact factor: 42.937

Review 5.  Tools and Techniques for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)/COVID-19 Detection.

Authors:  Seyed Hamid Safiabadi Tali; Jason J LeBlanc; Zubi Sadiq; Oyejide Damilola Oyewunmi; Carolina Camargo; Bahareh Nikpour; Narges Armanfard; Selena M Sagan; Sana Jahanshahi-Anbuhi
Journal:  Clin Microbiol Rev       Date:  2021-05-12       Impact factor: 26.132

Review 6.  An update on the neurological short tandem repeat expansion disorders and the emergence of long-read sequencing diagnostics.

Authors:  Sanjog R Chintalaphani; Sandy S Pineda; Ira W Deveson; Kishore R Kumar
Journal:  Acta Neuropathol Commun       Date:  2021-05-25       Impact factor: 7.801

Review 7.  Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time.

Authors:  Mariana Lopes; Sandra Louzada; Margarida Gama-Carvalho; Raquel Chaves
Journal:  Int J Mol Sci       Date:  2021-04-29       Impact factor: 5.923

8.  Reprogramming enriches for somatic cell clones with small-scale mutations in cancer-associated genes.

Authors:  Maike Kosanke; Katarzyna Osetek; Alexandra Haase; Lutz Wiehlmann; Colin Davenport; Adrian Schwarzer; Felix Adams; Marc-Jens Kleppa; Axel Schambach; Sylvia Merkert; Stephanie Wunderlich; Sandra Menke; Marie Dorda; Ulrich Martin
Journal:  Mol Ther       Date:  2021-04-06       Impact factor: 12.910

9.  Comparison of Illumina MiSeq and the Ion Torrent PGM and S5 platforms for whole-genome sequencing of picornaviruses and caliciviruses.

Authors:  Rachel L Marine; Laura C Magaña; Christina J Castro; Kun Zhao; Anna M Montmayeur; Alexander Schmidt; Marta Diez-Valcarce; Terry Fei Fan Ng; Jan Vinjé; Cara C Burns; W Allan Nix; Paul A Rota; M Steven Oberste
Journal:  J Virol Methods       Date:  2020-04-14       Impact factor: 2.623

10.  Cattle connection: molecular epidemiology of BVDV outbreaks via rapid nanopore whole-genome sequencing of clinical samples.

Authors:  Jacqueline King; Anne Pohlmann; Kamila Dziadek; Martin Beer; Kerstin Wernike
Journal:  BMC Vet Res       Date:  2021-07-12       Impact factor: 2.741

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