Literature DB >> 31091862

Synthetic Biology Tools for Novel Secondary Metabolite Discovery in Streptomyces.

Namil Lee1, Soonkyu Hwang1, Yongjae Lee1, Suhyung Cho1, Bernhard Palsson2,3,4, Byung-Kwan Cho1,5.   

Abstract

Streptomyces are attractive microbial cell factories that have industrial capability to produce a wide array of bioactive secondary metabolites. However, the genetic potential of the Streptomyces species has not been fully utilized because most of their secondary metabolite biosynthetic gene clusters (SM-BGCs) are silent under laboratory culture conditions. In an effort to activate SM-BGCs encoded in Streptomyces genomes, synthetic biology has emerged as a robust strategy to understand, design, and engineer the biosynthetic capability of Streptomyces secondary metabolites. In this regard, diverse synthetic biology tools have been developed for Streptomyces species with technical advances in DNA synthesis, sequencing, and editing. Here, we review recent progress in the development of synthetic biology tools for the production of novel secondary metabolites in Streptomyces, including genomic elements and genome engineering tools for Streptomyces, the heterologous gene expression strategy of designed biosynthetic gene clusters in the Streptomyces chassis strain, and future directions to expand diversity of novel secondary metabolites.

Keywords:  CRISPR/Cas9; Streptomyces; antibiotics; biosynthetic gene cluster; genome editing; heterologous expression; secondary metabolites; synthetic biology

Mesh:

Substances:

Year:  2019        PMID: 31091862     DOI: 10.4014/jmb.1904.04015

Source DB:  PubMed          Journal:  J Microbiol Biotechnol        ISSN: 1017-7825            Impact factor:   2.351


  13 in total

1.  Reporter-Guided Transposon Mutant Selection for Activation of Silent Gene Clusters in Burkholderia thailandensis.

Authors:  Dainan Mao; Aya Yoshimura; Rurun Wang; Mohammad R Seyedsayamdost
Journal:  Chembiochem       Date:  2020-03-03       Impact factor: 3.164

Review 2.  System-level understanding of gene expression and regulation for engineering secondary metabolite production in Streptomyces.

Authors:  Yongjae Lee; Namil Lee; Soonkyu Hwang; Kangsan Kim; Woori Kim; Jihun Kim; Suhyung Cho; Bernhard O Palsson; Byung-Kwan Cho
Journal:  J Ind Microbiol Biotechnol       Date:  2020-08-10       Impact factor: 3.346

Review 3.  Recent metabolomics and gene editing approaches for synthesis of microbial secondary metabolites for drug discovery and development.

Authors:  Rajeshwari Sinha; Babita Sharma; Arun Kumar Dangi; Pratyoosh Shukla
Journal:  World J Microbiol Biotechnol       Date:  2019-10-22       Impact factor: 3.312

Review 4.  Deep-Sea Natural Products from Extreme Environments: Cold Seeps and Hydrothermal Vents.

Authors:  Mengjing Cong; Xiaoyan Pang; Kai Zhao; Yue Song; Yonghong Liu; Junfeng Wang
Journal:  Mar Drugs       Date:  2022-06-19       Impact factor: 6.085

5.  Comparative genomic analysis of Streptomyces rapamycinicus NRRL 5491 and its mutant overproducing rapamycin.

Authors:  Hee-Geun Jo; Joshua Julio Adidjaja; Do-Kyung Kim; Bu-Soo Park; Namil Lee; Byung-Kwan Cho; Hyun Uk Kim; Min-Kyu Oh
Journal:  Sci Rep       Date:  2022-06-18       Impact factor: 4.996

Review 6.  CRISPR-Mediated Base Editing: From Precise Point Mutation to Genome-Wide Engineering in Nonmodel Microbes.

Authors:  Mengyuan Li; Yi-Xin Huo; Shuyuan Guo
Journal:  Biology (Basel)       Date:  2022-04-09

7.  Colibrimycins, Novel Halogenated Hybrid Polyketide Synthase-Nonribosomal Peptide Synthetase (PKS-NRPS) Compounds Produced by Streptomyces sp. Strain CS147.

Authors:  Laura Prado-Alonso; Ignacio Pérez-Victoria; Mónica G Malmierca; Ignacio Montero; Elisa Rioja-Blanco; Jesús Martín; Fernando Reyes; Carmen Méndez; José A Salas; Carlos Olano
Journal:  Appl Environ Microbiol       Date:  2021-10-20       Impact factor: 5.005

8.  Inducing Global Expression of Actinobacterial Biosynthetic Gene Clusters.

Authors:  Meghan A Pepler; Xiafei Zhang; Marie A Elliot
Journal:  Methods Mol Biol       Date:  2022

9.  Elucidating the Regulatory Elements for Transcription Termination and Posttranscriptional Processing in the Streptomyces clavuligerus Genome.

Authors:  Soonkyu Hwang; Namil Lee; Donghui Choe; Yongjae Lee; Woori Kim; Yujin Jeong; Suhyung Cho; Bernhard O Palsson; Byung-Kwan Cho
Journal:  mSystems       Date:  2021-05-04       Impact factor: 6.496

10.  Transcriptome and translatome profiles of Streptomyces species in different growth phases.

Authors:  Woori Kim; Soonkyu Hwang; Namil Lee; Yongjae Lee; Suhyung Cho; Bernhard Palsson; Byung-Kwan Cho
Journal:  Sci Data       Date:  2020-05-08       Impact factor: 6.444

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