Literature DB >> 31076432

Direct Cell Mass Measurements Expand the Role of Small Microorganisms in Nature.

Alexander Khachikyan1, Jana Milucka2, Sten Littmann1, Soeren Ahmerkamp1,3, Travis Meador3,4, Martin Könneke3, Thomas Burg5, Marcel M M Kuypers1.   

Abstract

Microbial biomass is a key parameter needed for the quantification of microbial turnover rates and their contribution to the biogeochemical element cycles. However, estimates of microbial biomass rely on empirically derived mass-to-volume relationships, and large discrepancies exist between the available empirical conversion factors. Here we report a significant nonlinear relationship between carbon mass and cell volume ([Formula: see text]; [Formula: see text]) based on direct cell mass, volume, and elemental composition measurements of 12 prokaryotic species with average volumes between 0.011 and 0.705 μm3 The carbon mass density of our measured cells ranged from 250 to 1,800 fg of C μm-3 for the measured cell volumes. Compared to other currently used models, our relationship yielded up to 300% higher carbon mass values. A compilation of our and previously published data showed that cells with larger volumes (>0.5 μm3) display a constant (carbon) mass-to-volume ratio, whereas cells with volumes below 0.5 μm3 exhibit a nonlinear increase in (carbon) mass density with decreasing volume. Small microorganisms dominate marine and freshwater bacterioplankton as well as soils and marine and terrestrial subsurface. The application of our experimentally determined conversion factors will help to quantify the true contribution of these microorganisms to ecosystem functions and global microbial biomass.IMPORTANCE Microorganisms are a major component of Earth's biosphere, and their activity significantly affects the biogeochemical cycling of bioavailable elements. To correctly determine the flux of carbon and energy in the environment, reliable estimates of microbial abundances and cellular carbon content are necessary. However, accurate assessments of cellular carbon content and dry weight are not trivial to obtain. Here we report direct measurements of cell dry and carbon mass of environmentally relevant prokaryotic microorganisms using a microfluidic mass sensor. We show a significant nonlinear relationship between carbon mass and cell volume and discuss this relationship in the light of currently used cellular mass models.
Copyright © 2019 American Society for Microbiology.

Entities:  

Keywords:  bacterioplankton; carbon content; microbial biomass; microorganisms; subsurface

Mesh:

Substances:

Year:  2019        PMID: 31076432      PMCID: PMC6606879          DOI: 10.1128/AEM.00493-19

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  34 in total

1.  Isolation of an autotrophic ammonia-oxidizing marine archaeon.

Authors:  Martin Könneke; Anne E Bernhard; José R de la Torre; Christopher B Walker; John B Waterbury; David A Stahl
Journal:  Nature       Date:  2005-09-22       Impact factor: 49.962

Review 2.  Marine microorganisms and global nutrient cycles.

Authors:  Kevin R Arrigo
Journal:  Nature       Date:  2005-09-15       Impact factor: 49.962

3.  Bacterial biovolume and biomass estimations.

Authors:  G Bratbak
Journal:  Appl Environ Microbiol       Date:  1985-06       Impact factor: 4.792

4.  Buoyant densities and dry-matter contents of microorganisms: conversion of a measured biovolume into biomass.

Authors:  L R Bakken; R A Olsen
Journal:  Appl Environ Microbiol       Date:  1983-04       Impact factor: 4.792

5.  Weighing of biomolecules, single cells and single nanoparticles in fluid.

Authors:  Thomas P Burg; Michel Godin; Scott M Knudsen; Wenjiang Shen; Greg Carlson; John S Foster; Ken Babcock; Scott R Manalis
Journal:  Nature       Date:  2007-04-26       Impact factor: 49.962

6.  Relationships between Biovolume and Biomass of Naturally Derived Marine Bacterioplankton.

Authors:  S Lee; J A Fuhrman
Journal:  Appl Environ Microbiol       Date:  1987-06       Impact factor: 4.792

7.  Anaerobic ammonium oxidation by anammox bacteria in the Black Sea.

Authors:  Marcel M M Kuypers; A Olav Sliekers; Gaute Lavik; Markus Schmid; Bo Barker Jørgensen; J Gijs Kuenen; Jaap S Sinninghe Damsté; Marc Strous; Mike S M Jetten
Journal:  Nature       Date:  2003-04-10       Impact factor: 49.962

8.  Elemental composition (C, N, P) and cell volume of exponentially growing and nutrient-limited bacterioplankton.

Authors:  Katarina Vrede; Mikal Heldal; Svein Norland; Gunnar Bratbak
Journal:  Appl Environ Microbiol       Date:  2002-06       Impact factor: 4.792

9.  High-resolution imaging of pelagic bacteria by Atomic Force Microscopy and implications for carbon cycling.

Authors:  Francesca Malfatti; Ty J Samo; Farooq Azam
Journal:  ISME J       Date:  2009-11-26       Impact factor: 10.302

10.  Significant contribution of Archaea to extant biomass in marine subsurface sediments.

Authors:  Julius S Lipp; Yuki Morono; Fumio Inagaki; Kai-Uwe Hinrichs
Journal:  Nature       Date:  2008-07-20       Impact factor: 49.962

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  6 in total

1.  Carbon recycling efficiency and phosphate turnover by marine nitrifying archaea.

Authors:  Travis B Meador; Niels Schoffelen; Timothy G Ferdelman; Osmond Rebello; Alexander Khachikyan; Martin Könneke
Journal:  Sci Adv       Date:  2020-05-08       Impact factor: 14.136

2.  Multiple carbon incorporation strategies support microbial survival in cold subseafloor crustal fluids.

Authors:  Elizabeth Trembath-Reichert; Sunita R Shah Walter; Marc Alec Fontánez Ortiz; Patrick D Carter; Peter R Girguis; Julie A Huber
Journal:  Sci Adv       Date:  2021-04-28       Impact factor: 14.136

3.  Biogels in Soils: Plant Mucilage as a Biofilm Matrix That Shapes the Rhizosphere Microbial Habitat.

Authors:  Meisam Nazari; Samuel Bickel; Pascal Benard; Kyle Mason-Jones; Andrea Carminati; Michaela A Dippold
Journal:  Front Plant Sci       Date:  2022-01-13       Impact factor: 5.753

4.  Calculation and Interpretation of Substrate Assimilation Rates in Microbial Cells Based on Isotopic Composition Data Obtained by nanoSIMS.

Authors:  Lubos Polerecky; Meri Eichner; Takako Masuda; Tomáš Zavřel; Sophie Rabouille; Douglas A Campbell; Kimberly Halsey
Journal:  Front Microbiol       Date:  2021-11-30       Impact factor: 5.640

5.  First insights into the prokaryotic community structure of Lake Cote, Costa Rica: Influence on nutrient cycling.

Authors:  Laura Brenes-Guillén; Daniela Vidaurre-Barahona; Lidia Avilés-Vargas; Victor Castro-Gutierrez; Eddy Gómez-Ramírez; Kaylen González-Sánchez; Marielos Mora-López; Gerardo Umaña-Villalobos; Lorena Uribe-Lorío; Francis Hassard
Journal:  Front Microbiol       Date:  2022-10-03       Impact factor: 6.064

6.  Microbial carrying capacity and carbon biomass of plastic marine debris.

Authors:  Shiye Zhao; Erik R Zettler; Linda A Amaral-Zettler; Tracy J Mincer
Journal:  ISME J       Date:  2020-09-02       Impact factor: 10.302

  6 in total

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