Literature DB >> 31075078

Outbreak of African Swine Fever, Vietnam, 2019.

Van Phan Le, Dae Gwin Jeong, Sun-Woo Yoon, Hye-Min Kwon, Thi Bich Ngoc Trinh, Thi Lan Nguyen, Thi To Nga Bui, Jinsik Oh, Joon Bae Kim, Kwang Myun Cheong, Nguyen Van Tuyen, Eunhye Bae, Thi Thu Hang Vu, Minjoo Yeom, Woonsung Na, Daesub Song.   

Abstract

African swine fever is one of the most dangerous diseases of swine. We confirmed the 2019 outbreak in Vietnam by real-time reverse transcription PCR. The causative strain belonged to p72 genotype II and was 100% identical with viruses isolated in China (2018) and Georgia (2007). International prevention and control collaboration is needed.

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Keywords:  African swine fever; Vietnam; outbreak; swine; viruses

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Year:  2019        PMID: 31075078      PMCID: PMC6590755          DOI: 10.3201/eid2507.190303

Source DB:  PubMed          Journal:  Emerg Infect Dis        ISSN: 1080-6040            Impact factor:   6.883


Since its first identification in East Africa in the early 1900s, African swine fever (ASF) spread to Kenya in the 1920s; transcontinental outbreaks in Europe and South America in the 1960s and in Georgia (Caucasus) in 2007 led to subsequent transmission to neighboring countries east of Georgia. Along with the outbreaks in the eastern territory of the Russian Federation, acute ASF outbreaks were reported in China in 2018 (). During January 15–31, 2019, a disease outbreak at a family-owned backyard pig farm in Hung Yen Province, Vietnam, was reported. The farm, ≈50 km from Hanoi and 250 km from the China border, housed 20 sows. In the early stage of the outbreak, 1 piglet and 1 sow exhibited marked redness all over the body, conjunctivitis, and hemorrhagic diarrhea. Breeding gilts demonstrated anorexia, cyanosis, and fever (>40.5°C). On February 1, 2019, after confirming that the mortality rate at this farm had surpassed 50%, we collected organ samples (e.g., spleen, liver, kidney, tonsil, and lymph nodes) from dying pigs and submitted them to the diagnostic laboratory at the Vietnam National University of Agriculture for ASF diagnosis. All specimens underwent homogenization, followed by extraction of viral DNA (). ASF virus DNA was identified by routine PCR, as recommended by the Office International des Epizooties (Paris, France), and by commercialized real-time PCR (Median Diagnostics Inc., http://www.mediandiagnostics.com). We named the detected ASF virus VNUA/HY-ASF1 and deposited the following complete genome sequences into GenBank: p10 (accession no. MK795932), p11.5 (MK795933), p12 (MK795934), p14.5 (MK795935), p17 (MK795936), p22 (MK795937), pE248R (MK795938), p30 (MK757460), p54 (MK554697), p72 (MK554698), and Cd2v (MK757459). We aligned the nucleotide sequences by using BioEdit version 7.2 (Ibis Biosciences, http://www.mbio.ncsu.edu/bioedit/bioedit.html) with ClustalW (http://clustal.org) and calculated sequence identity. Using MEGA7 (https://www.megasoftware.net)and the neighbor-joining method, we based phylogenetic analysis on the genetic information and calculated bootstrap values with 1,000 replicates. The genotype was determined by p72 gene characterization as reported previously (,). Phylogenetic trees revealed that the VNUA/HY-ASF1 strain belonged to p72 genotype II (Figure) and was 100% identical to China strains SY18/China/2018 (GenBank accession no. MH713612) and AnhuiXCGQ/China/2018 (MK128995) and other genotype II strains of Europe: Georgia/2007/1 (GenBank accession no. FR682468.1), Russia/2012 (KJ195685), Estonia/2014 (LS478113), and Poland/2015 (MH681419).
Figure

Phylogenetic analysis of major capsid protein gene (p72) of African swine fever virus isolated during outbreak in Vietnam in 2019 (VNUA HY-ASF1; black square) and reference isolates. The phylogenetic tree was constructed by using the neighbor-joining method in MEGA7 (http://www.megasoftware.net). Bootstrap values were calculated with 1,000 replicates. GenBank accession numbers, strain name, country, and year of collection are indicated. Scale bars indicate nucleotide substitutions per site.

Phylogenetic analysis of major capsid protein gene (p72) of African swine fever virus isolated during outbreak in Vietnam in 2019 (VNUA HY-ASF1; black square) and reference isolates. The phylogenetic tree was constructed by using the neighbor-joining method in MEGA7 (http://www.megasoftware.net). Bootstrap values were calculated with 1,000 replicates. GenBank accession numbers, strain name, country, and year of collection are indicated. Scale bars indicate nucleotide substitutions per site. The clinical signs and necropsy findings of the pigs involved in the 2019 outbreak in Vietnam were similar to those caused by the virus strains in China and Georgia (e.g., high mortality rates over a short period and multifocal hemorrhagic lesions in many organs). However, the clinical forms and pathophysiology of ASF varied according to virus virulence, exposure dose, and transmission route. Considering the epidemiologic features of the site where ASF has recently occurred, the virus is highly likely to have reached Vietnam via infected wild boar, by movement of pigs and pork products, or by infected fomites (). The most probable source and major cause of transmission across the countries is thought to be ASF virus–contaminated pork products (). The outbreak in Vietnam was confirmed in the northern part of the country, near China, where many instances of illegal movement of animals and meat products across the China–Vietnam border have been reported (http://www.fao.org/3/i8805en/I8805EN.pdf). Therefore, it is likely that the virus originated in China. Although the p30, p54, and p72 sequences were 100% identical to those from China and Georgia, whole genomes must be monitored for possible changes and further spread of the ASF virus. Since the 2018 outbreak in China, the subsequent ASF outbreak in Vietnam (February 1, 2019) increases the possibility of virus spread to nearby swine-raising Southeast Asia countries, including Laos, Thailand, Cambodia, and Myanmar. Although ASF has occurred in many countries, including Russia and Europe, its outbreak in Asia is far more critical because 60% of the world’s pig population is concentrated in that area and the socioeconomic effects of swine disease would be greater than that in other regions. Therefore, to avoid great economic losses worldwide, we highly recommend that preventive and control measures be developed and implemented through international collaboration.
  5 in total

1.  Genotyping field strains of African swine fever virus by partial p72 gene characterisation.

Authors:  A D S Bastos; M-L Penrith; C Crucière; J L Edrich; G Hutchings; F Roger; E Couacy-Hymann; G R Thomson
Journal:  Arch Virol       Date:  2003-04       Impact factor: 2.574

2.  Comparative analysis of African swine fever virus genotypes and serogroups.

Authors:  Alexander Malogolovkin; Galina Burmakina; Ilya Titov; Alexey Sereda; Andrey Gogin; Elena Baryshnikova; Denis Kolbasov
Journal:  Emerg Infect Dis       Date:  2015-02       Impact factor: 6.883

Review 3.  Transmission routes of African swine fever virus to domestic pigs: current knowledge and future research directions.

Authors:  Claire Guinat; Andrey Gogin; Sandra Blome; Guenther Keil; Reiko Pollin; Dirk U Pfeiffer; Linda Dixon
Journal:  Vet Rec       Date:  2016-03-12       Impact factor: 2.695

4.  African Swine Fever Virus, Siberia, Russia, 2017.

Authors:  Denis Kolbasov; Ilya Titov; Sodnom Tsybanov; Andrey Gogin; Alexander Malogolovkin
Journal:  Emerg Infect Dis       Date:  2018-04       Impact factor: 6.883

5.  Molecular Characterization of African Swine Fever Virus, China, 2018.

Authors:  Shengqiang Ge; Jinming Li; Xiaoxu Fan; Fuxiao Liu; Lin Li; Qinghua Wang; Weijie Ren; Jingyue Bao; Chunju Liu; Hua Wang; Yutian Liu; Yongqiang Zhang; Tiangang Xu; Xiaodong Wu; Zhiliang Wang
Journal:  Emerg Infect Dis       Date:  2018-11-17       Impact factor: 6.883

  5 in total
  34 in total

1.  Molecular profile of African swine fever virus (ASFV) circulating in Vietnam during 2019-2020 outbreaks.

Authors:  Nguyen Tuan Anh Mai; Xuan Dang Vu; Thi Thu Huyen Nguyen; Van Tam Nguyen; Thi Bich Ngoc Trinh; Yong Joo Kim; Hyun-Joo Kim; Ki-Hyun Cho; Thi Lan Nguyen; Thi To Nga Bui; Dae Gwin Jeong; Sun-Woo Yoon; Thang Truong; Aruna Ambagala; Daesub Song; Van Phan Le
Journal:  Arch Virol       Date:  2021-01-16       Impact factor: 2.574

2.  An extra insertion of tandem repeat sequence in African swine fever virus, China, 2019.

Authors:  Shengqiang Ge; Yutian Liu; Lin Li; Qinghua Wang; Jinming Li; Weijie Ren; Chunju Liu; Jingyue Bao; Xiaodong Wu; Zhiliang Wang
Journal:  Virus Genes       Date:  2019-09-27       Impact factor: 2.332

3.  Application of portable real-time recombinase-aided amplification (rt-RAA) assay in the clinical diagnosis of ASFV and prospective DIVA diagnosis.

Authors:  Zhao-Hua Wang; Pei Li; Xiao Lin; Hong Jia; Yi-Tong Jiang; Xiao-Jia Wang; Shao-Hua Hou
Journal:  Appl Microbiol Biotechnol       Date:  2021-04-09       Impact factor: 4.813

4.  Detection of African swine fever virus in neonatal piglets with congenital tremors.

Authors:  Hai Ngoc Nguyen; Quan T Nguyen; Binh T P Nguyen; Thu H A Tran; Duy T Do; Hai Thanh Hoang
Journal:  Arch Virol       Date:  2022-02-16       Impact factor: 2.574

5.  Multiple variants of African swine fever virus circulating in Vietnam.

Authors:  Van Tam Nguyen; Ki-Hyun Cho; Nguyen Tuan Anh Mai; Jee-Yong Park; Thi Bich Ngoc Trinh; Min-Kyung Jang; Thi Thu Huyen Nguyen; Xuan Dang Vu; Thi Lan Nguyen; Van Diep Nguyen; Aruna Ambagala; Yong-Joo Kim; Van Phan Le
Journal:  Arch Virol       Date:  2022-02-21       Impact factor: 2.574

6.  Development and application of a colloidal-gold dual immunochromatography strip for detecting African swine fever virus antibodies.

Authors:  Ying Wan; Zhengwang Shi; Gaochaung Peng; Lijuan Wang; Juncong Luo; Yi Ru; Gaijing Zhou; Yuan Ma; Rui Song; Bo Yang; Liyan Cao; Hong Tian; Haixue Zheng
Journal:  Appl Microbiol Biotechnol       Date:  2021-12-23       Impact factor: 4.813

7.  Genetic Characterization of African Swine Fever Virus in Various Outbreaks in Central and Southern Vietnam During 2019-2021.

Authors:  Minh Nam Nguyen; Tram T N Ngo; Duyen M T Nguyen; Danh Cong Lai; Hai N Nguyen; Trang T P Nguyen; Joo Young Lee; Toan T Nguyen; Duy T Do
Journal:  Curr Microbiol       Date:  2022-10-08       Impact factor: 2.343

8.  Development of optimized protocol for culturing African swine fever virus field isolates in MA104 cells.

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Journal:  Can J Vet Res       Date:  2022-10       Impact factor: 0.897

9.  Dynamic Models of Within-Herd Transmission and Recommendation for Vaccination Coverage Requirement in the Case of African Swine Fever in Vietnam.

Authors:  Thi Ngan Mai; Satoshi Sekiguchi; Thi My Le Huynh; Thi Bich Phuong Cao; Van Phan Le; Van Hieu Dong; Viet Anh Vu; Anuwat Wiratsudakul
Journal:  Vet Sci       Date:  2022-06-14

10.  Temporal and Spatial Evolution of the African Swine Fever Epidemic in Vietnam.

Authors:  Qihui Shao; Rendong Li; Yifei Han; Dongfeng Han; Juan Qiu
Journal:  Int J Environ Res Public Health       Date:  2022-06-29       Impact factor: 4.614

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