Literature DB >> 31074541

Characterization of human frataxin missense variants in cancer tissues.

Maria Petrosino1,2,3, Alessandra Pasquo4, Leonore Novak1, Angelo Toto1,5,6, Stefano Gianni1,5,6, Elide Mantuano7, Liana Veneziano7, Velia Minicozzi8, Annalisa Pastore9, Rita Puglisi9, Emidio Capriotti10, Roberta Chiaraluce1, Valerio Consalvi1.   

Abstract

Human frataxin is an iron-binding protein involved in the mitochondrial iron-sulfur (Fe-S) clusters assembly, a process fundamental for the functional activity of mitochondrial proteins. Decreased level of frataxin expression is associated with the neurodegenerative disease Friedreich ataxia. Defective function of frataxin may cause defects in mitochondria, leading to increased tumorigenesis. Tumor-initiating cells show higher iron uptake, a decrease in iron storage and a reduced Fe-S clusters synthesis and utilization. In this study, we selected, from COSMIC database, the somatic human frataxin missense variants found in cancer tissues p.D104G, p.A107V, p.F109L, p.Y123S, p.S161I, p.W173C, p.S181F, and p.S202F to analyze the effect of the single amino acid substitutions on frataxin structure, function, and stability. The spectral properties, the thermodynamic and the kinetic stability, as well as the molecular dynamics of the frataxin missense variants found in cancer tissues point to local changes confined to the environment of the mutated residues. The global fold of the variants is not altered by the amino acid substitutions; however, some of the variants show a decreased stability and a decreased functional activity in comparison with that of the wild-type protein.
© 2019 Wiley Periodicals, Inc.

Entities:  

Keywords:  cancer tissues; human frataxin; missense variants; protein folding; protein stability; protein variants; single amino acid substitution; somatic mutations

Mesh:

Substances:

Year:  2019        PMID: 31074541      PMCID: PMC6744310          DOI: 10.1002/humu.23789

Source DB:  PubMed          Journal:  Hum Mutat        ISSN: 1059-7794            Impact factor:   4.878


  72 in total

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2.  The changing nature of the protein folding transition state: implications for the shape of the free-energy profile for folding.

Authors:  M Oliveberg; Y J Tan; M Silow; A R Fersht
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Review 3.  Breast cancer in two sisters with Friedreich's ataxia.

Authors:  A Kidd; R Coleman; M Whiteford; L H Barron; S A Simpson; N E Haites
Journal:  Eur J Surg Oncol       Date:  2001-08       Impact factor: 4.424

4.  Dynamics, stability and iron-binding activity of frataxin clinical mutants.

Authors:  Ana R Correia; Chiara Pastore; Salvatore Adinolfi; Annalisa Pastore; Cláudio M Gomes
Journal:  FEBS J       Date:  2008-07       Impact factor: 5.542

5.  Effector role reversal during evolution: the case of frataxin in Fe-S cluster biosynthesis.

Authors:  Jennifer Bridwell-Rabb; Clara Iannuzzi; Annalisa Pastore; David P Barondeau
Journal:  Biochemistry       Date:  2012-03-15       Impact factor: 3.162

6.  Acidic residues of yeast frataxin have an essential role in Fe-S cluster assembly.

Authors:  Françoise Foury; Annalisa Pastore; Mathieu Trincal
Journal:  EMBO Rep       Date:  2006-12-22       Impact factor: 8.807

Review 7.  Friedreich Ataxia: current status and future prospects.

Authors:  Katrin Bürk
Journal:  Cerebellum Ataxias       Date:  2017-04-07

8.  COSMIC: somatic cancer genetics at high-resolution.

Authors:  Simon A Forbes; David Beare; Harry Boutselakis; Sally Bamford; Nidhi Bindal; John Tate; Charlotte G Cole; Sari Ward; Elisabeth Dawson; Laura Ponting; Raymund Stefancsik; Bhavana Harsha; Chai Yin Kok; Mingming Jia; Harry Jubb; Zbyslaw Sondka; Sam Thompson; Tisham De; Peter J Campbell
Journal:  Nucleic Acids Res       Date:  2016-11-28       Impact factor: 16.971

Review 9.  Structural Perspective on Revealing and Altering Molecular Functions of Genetic Variants Linked with Diseases.

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Review 10.  Metabolic reprogramming results in abnormal glycolysis in gastric cancer: a review.

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  8 in total

1.  Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge.

Authors:  Castrense Savojardo; Maria Petrosino; Giulia Babbi; Samuele Bovo; Carles Corbi-Verge; Rita Casadio; Piero Fariselli; Lukas Folkman; Aditi Garg; Mostafa Karimi; Panagiotis Katsonis; Philip M Kim; Olivier Lichtarge; Pier Luigi Martelli; Alessandra Pasquo; Debnath Pal; Yang Shen; Alexey V Strokach; Paola Turina; Yaoqi Zhou; Gaia Andreoletti; Steven E Brenner; Roberta Chiaraluce; Valerio Consalvi; Emidio Capriotti
Journal:  Hum Mutat       Date:  2019-07-12       Impact factor: 4.878

2.  Predicting changes in protein stability caused by mutation using sequence-and structure-based methods in a CAGI5 blind challenge.

Authors:  Alexey Strokach; Carles Corbi-Verge; Philip M Kim
Journal:  Hum Mutat       Date:  2019-08-07       Impact factor: 4.878

3.  Are machine learning based methods suited to address complex biological problems? Lessons from CAGI-5 challenges.

Authors:  Castrense Savojardo; Giulia Babbi; Samuele Bovo; Emidio Capriotti; Pier Luigi Martelli; Rita Casadio
Journal:  Hum Mutat       Date:  2019-06-18       Impact factor: 4.878

4.  Turning Failures into Applications: The Problem of Protein ΔΔG Prediction.

Authors:  Rita Casadio; Castrense Savojardo; Piero Fariselli; Emidio Capriotti; Pier Luigi Martelli
Journal:  Methods Mol Biol       Date:  2022

5.  Metal Ion Binding in Wild-Type and Mutated Frataxin: A Stability Study.

Authors:  S Morante; S Botticelli; R Chiaraluce; V Consalvi; G La Penna; L Novak; A Pasquo; M Petrosino; O Proux; G Rossi; G Salina; F Stellato
Journal:  Front Mol Biosci       Date:  2022-05-31

Review 6.  Molecular Details of the Frataxin-Scaffold Interaction during Mitochondrial Fe-S Cluster Assembly.

Authors:  Courtney J Campbell; Ashley E Pall; Akshata R Naik; Lindsey N Thompson; Timothy L Stemmler
Journal:  Int J Mol Sci       Date:  2021-06-02       Impact factor: 5.923

Review 7.  Protein Mutations and Stability, a Link with Disease: The Case Study of Frataxin.

Authors:  Rita Puglisi
Journal:  Biomedicines       Date:  2022-02-11

8.  Modelling Protein Plasticity: The Example of Frataxin and Its Variants.

Authors:  Simone Botticelli; Giovanni La Penna; Germano Nobili; Giancarlo Rossi; Francesco Stellato; Silvia Morante
Journal:  Molecules       Date:  2022-03-17       Impact factor: 4.411

  8 in total

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