| Literature DB >> 31073186 |
Mashael R Al-Anazi1, Sabine Matou-Nasri2, Arwa A Al-Qahtani3, Jahad Alghamdi2, Ayman A Abdo4,5, Faisal M Sanai6,5, Waleed K Al-Hamoudi4,5, Khalid A Alswat4,5, Hamad I Al-Ashgar7, Mohammed Q Khan7, Ali Albenmousa8, Monis B Shamsi9, Salah K Alanazi1, Damian Dela Cruz1, Marie Fe F Bohol1, Mohammed N Al-Ahdal1,10, Ahmed A Al-Qahtani11,12.
Abstract
Interleukin-37 (IL-37) has recently been recognized as a strong anti-inflammatory cytokine having anti-tumor activity against hepatocellular carcinoma (HCC) in hepatitis B virus (HBV)-infected patients. HCC is a typical inflammation-related cancer, and genetic variations within the IL-37 gene may be associated with the risk of HBV infection. Identification of the allelic patterns that genetically have a high disease risk is essential for the development of preventive diagnostics for HBV-mediated liver disease pathogenesis. In this study, we aimed to investigate the association between single nucleotide polymorphisms (SNPs) within the IL-37 gene and disease sequelae associated with HBV infection. We genotyped ten IL-37 SNPs in 1274 patients infected with HBV and 599 healthy controls from a Saudi Arabian population. Among the selected SNPs, two SNPs (rs2723175 and rs2708973) were strongly associated with HBV infection, and six SNPs (rs2723176, rs2723175, rs2723186, rs364030, rs28947200, rs4392270) were associated with HBV clearance, comparing healthy controls and HBV infected-patients respectively. A suggestive association of rs4849133 was identified with active HBV surface antigen (HBsAg) carrier and HBV-related liver disease progression. In conclusion, our findings suggest that variations at the IL-37 gene may be useful as genetic predictive risk factors for HBV infection and HBV-mediated liver disease progression in the Saudi Arabian population.Entities:
Mesh:
Substances:
Year: 2019 PMID: 31073186 PMCID: PMC6509272 DOI: 10.1038/s41598-019-42808-4
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Demographic and clinical characteristics of patients infected with HBV and healthy control subjects.
| Variable | Inactive (n = 563) | Active (n = 217) | Cirrhosis (n = 64) | HCC (n = 30) | Healthy Control (n = 599) | Clearance (n = 400) | p-valuea |
|---|---|---|---|---|---|---|---|
| Age (yrs.)** | 40.65 ± 13.33 | 36.085 ± 11.76 | 53.17 ± 12.67 | 60.034 ± 11.78 | 30.79 ± 8.93 | 37.14 ± 10.72 | <0.0001 |
|
| |||||||
| Male count (%) | 380 (67.5%) | 174 (80.2%) | 51 (79.7%) | 29 (96.7%) | 567 (94.7%) | <0.0001 | |
| Female count (%) | 183 (32.5%) | 43 (19.8%) | 13 (20.3%) | 1 (3.3%) | 32 (5.3%) | ||
| BMI* | 27.70 (24.87–31.73) | 27.10 (23.06–30.855) | 26.14 (21.815–29.87) | 24.055 (21.960–27.44) | 0.001 | ||
| ALT** | 58.74 ± 293.82 | 91.13 ± 108.10 | 71.32 ± 116.04 | 80.72 ± 76.44 | 0.157 | ||
| HCV Load (Log10)* | 2.290 (1.30–3.16) | 5.54 (4.50–7.70) | 2.77 (1.55–4.922) | 3.64 (1.080–5.67) | <0.0001 | ||
*Values are expressed as median interquartile range (25th–75th), **Values are expressed as Mean ± SD. pa: nonparametric test and one-way ANOVA for continuous data and Chi square test for categorical data. Abbreviations: BMI: Body mass index; ALT: alanine aminotransferase.
Comparison of genotypic distributions between patients infected with HBV and healthy controls.
| SNPs | Genotype/Allele distribution | Control (n = 599) | % | HBV patients (n = 874) | % | OR (95% C.I.) | χ² | p-value |
|---|---|---|---|---|---|---|---|---|
| rs2723176 | CC | 560 | 93.49% | 794 | 90.85% | Ref | ||
| AC | 36 | 6.01% | 75 | 8.58% | 1.469 (0.973–2.218) | 3.387 | 0.066 | |
| AA | 3 | 0.50% | 5 | 0.57% | 1.175 (0.280–4.939 | 0.049 | 1.00 | |
| C | 1156 | 96.49% | 1663 | 95.14% | 1.407 (0.965–2.051) | 3.172 | 0.075 | |
| A | 42 | 3.51% | 85 | 4.86% | ||||
| AA + AC vs CC | 1.447 (0.972–2.153) | 3.340 | 0.068 | |||||
| AA vs AC + CC | 0.875 (0.208–3.675) | 0.033 | 0.854 | |||||
| rs2723175 | GG | 554 | 92.49% | 591 | 67.62% | Ref | ||
| AG | 28 | 4.67% | 238 | 27.23% | 7.968 (5.296–11.987) | 127.66 |
| |
| AA | 17 | 2.84% | 45 | 5.15% | 2.481 (1.403–4.387) | 10.370 |
| |
| G | 1136 | 94.82% | 1420 | 81.24% | 4.232 (3.191–5.613) | 114.283 |
| |
| A | 62 | 5.18% | 328 | 18.76% | ||||
| AA + AG vs GG | 5.895 (4.216–8.243) | 126.976 |
| |||||
| AA vs AG + GG | 0.538 (0.305–0.950) | 4.710 | 0.030 | |||||
| rs2723186 | GG | 553 | 92.32% | 782 | 89.47% | Ref | ||
| AG | 28 | 4.67% | 54 | 6.18% | 1.364 (0.853–2.180) | 1.691 | 0.193 | |
| AA | 18 | 3.01% | 38 | 4.35% | 1.493 (0.843–2.643) | 1.913 | 0.167 | |
| G | 1134 | 94.66% | 1618 | 92.56% | 1.424 (1.045–1.939) | 5.071 | 0.024 | |
| A | 64 | 5.34% | 130 | 7.44% | ||||
| AA + AG vs GG | 1.414 (0.977–2.048) | 3.392 | 0.065 | |||||
| AA vs AG + GG | 0.682 (0.385–1.206) | 1.752 | 0.186 | |||||
| rs2723168 | AA | 19 | 3.17% | 35 | 4.00% | Ref | ||
| AG | 578 | 96.49% | 834 | 95.42% | 0.783 (0.444–1.383) | 0.712 | 0.399 | |
| GG | 2 | 0.33% | 5 | 0.57% | 1.357 (0.240–7.673) | 0.120 | 0.728 | |
| A | 616 | 51.42% | 904 | 51.72% | 0.988 (0.853–1.145) | 0.025 | 0.874 | |
| G | 582 | 48.58% | 844 | 48.28% | ||||
| GG + AG vs AA | 0.785 (0.445–1.386) | 0.698 | 0.404 | |||||
| GG vs AG + AA | 0.582 (0.113–3.011) | 0.426 | 0.708 | |||||
| rs4364030 | CC | 292 | 48.75% | 428 | 48.97% | Ref | ||
| CG | 245 | 40.90% | 357 | 40.85% | 0.994 (0.797–1.239) | 0.003 | 0.958 | |
| GG | 62 | 10.35% | 89 | 10.18% | 0.979 (0.686–1.399) | 0.013 | 0.909 | |
| C | 829 | 69.20% | 1213 | 69.39% | 0.991 (0.845–1.162) | 0.013 | 0.910 | |
| G | 369 | 30.80% | 535 | 30.61% | ||||
| GG + CG vs CC | 0.991 (0.805–1.220) | 0.007 | 0.933 | |||||
| GG vs CG + CC | 1.018 (0.723–1.434) | 0.011 | 0.917 | |||||
| rs3811047 | GG | 168 | 28.05% | 264 | 30.21% | Ref | ||
| AG | 278 | 46.41% | 389 | 44.51% | 0.890 (0.695–1.140) | 0.850 | 0.358 | |
| AA | 153 | 25.54% | 221 | 25.29% | 0.919 (0.693–1.219) | 0.340 | 0.559 | |
| G | 614 | 51.25% | 917 | 52.46% | 0.953 (0.822–1.104) | 0.420 | 0.519 | |
| A | 584 | 48.75% | 831 | 47.54% | ||||
| AA + AG vs GG | 0.901 (0.716–1.133) | 0.800 | 0.371 | |||||
| AA vs AG + GG | 1.014 (0.798–1.287) | 0.010 | 0.912 | |||||
| rs28947200 | CC | 511 | 85.31% | 771 | 88.22% | Ref | ||
| CT | 55 | 9.18% | 80 | 9.15% | 0.964 (0.672–1.383) | 0.040 | 0.842 | |
| TT | 33 | 5.51% | 23 | 2.63% | 0.462 (0.268–0.796) | 8.087 | 0.004 | |
| C | 1077 | 89.90% | 1622 | 92.79% | 0.691 (0.533–0.898) | 7.739 | 0.005 | |
| T | 121 | 10.10% | 126 | 7.21% | ||||
| TT + CT vs CC | 0.776 (0.571–1.053) | 2.660 | 0.103 | |||||
| TT vs CT + CC | 2.157 (1.254–3.713) | 8.047 | 0.005 | |||||
| rs4392270 | GG | 555 | 92.65% | 796 | 91.08% | Ref | ||
| AG | 33 | 5.51% | 54 | 6.18% | 1.141 (0.730–1.783) | 0.335 | 0.562 | |
| AA | 11 | 1.84% | 24 | 2.75% | 1.521 (0.739–3.131) | 1.316 | 0.251 | |
| G | 1143 | 95.41% | 1646 | 94.16% | 1.288 (0.920–1.803) | 2.181 | 0.139 | |
| A | 55 | 4.59% | 102 | 5.84% | ||||
| AA + AG vs GG | 1.236 (0.8841–1.817) | 1.166 | 0.280 | |||||
| AA vs AG + GG | 0.663 (0.322–1.363) | 1.268 | 0.260 | |||||
| rs4849133 | TT | 513 | 85.64% | 706 | 80.78% | Ref | ||
| CT | 67 | 11.19% | 119 | 13.62% | 1.291 (0.937–1.778) | 2.447 | 0.118 | |
| CC | 19 | 3.17% | 49 | 5.61% | 1.874 (1.090–3.221) | 5.312 | 0.021 | |
| T | 1093 | 91.24% | 1531 | 87.59% | 1.475 (1.154–1.886) | 9.725 | 0.002 | |
| C | 105 | 8.76% | 217 | 12.41% | ||||
| CC + CT vs TT | 1.419 (1.069–1.885) | 5.894 | 0.015 | |||||
| CC vs CT + TT | 0.552 (0.321–0.947) | 4.784 | 0.029 | |||||
|
| GG | 576 | 96.16% | 787 | 90.05% | Ref | ||
| AG | 9 | 1.50% | 65 | 7.44% | 5.286 (2.611–10.701) | 26.342 |
| |
| AA | 14 | 2.34% | 22 | 2.52% | 1.150 (0.583–2.267) | 0.163 | 0.686 | |
| G | 1161 | 96.91% | 1639 | 93.76% | 2.087 (1.426–3.053) | 14.948 |
| |
| A | 37 | 3.09% | 109 | 6.24% | ||||
| AA + AG vs GG | 2.768 (1.727–4.438) | 19.230 |
| |||||
| AA vs AG + GG | 0.927 (0.470–1.826) | 0.050 | 0.826 |
Bold indicates significance.
Comparison of genotypic distributions between patients infected with HBV and the clearance group.
| SNPs | Genotype/Allele distribution | Clearance (n = 400) | % | HBV patients (n = 874) | % | OR (95% C.I.) | χ² | p-value |
|---|---|---|---|---|---|---|---|---|
|
| CC | 335 | 83.75% | 794 | 90.85% | Ref | ||
| AC | 58 | 14.50% | 75 | 8.58% | 0.546 (0.378–0.786) | 10.780 | 0.001 | |
| AA | 7 | 1.75% | 5 | 0.57% | 0.301 (0.095–0.956) | 4.650 | 0.031 | |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
| ||||
|
|
|
|
| |||||
| AA vs AC + CC | 3.096 (0.976–9.814) | 4.080 | 0.043 | |||||
|
| GG | 369 | 92.25% | 591 | 67.62% | Ref | ||
|
|
|
|
|
|
|
|
| |
| AA | 17 | 4.25% | 45 | 5.15% | 1.653 (0.932–2.931) | 3.010 | 0.083 | |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
| ||||
|
|
|
|
| |||||
| AA vs AG + GG | 0.818 (0.462–1.447) | 0.480 | 0.489 | |||||
|
| GG | 331 | 82.75% | 782 | 89.47% | Ref | ||
|
|
|
|
|
|
|
|
| |
| AA | 7 | 1.75% | 38 | 4.35% | 2.298 (1.016–5.198) | 4.210 | 0.040 | |
| G | 724 | 90.50% | 1618 | 92.56% | 0.765 (0.569–1.029) | 3.140 | 0.076 | |
| A | 76 | 9.50% | 130 | 7.44% | ||||
|
|
|
|
| |||||
| AA vs AG + GG | 0.392 (0.173–0.885) | 5.430 | 0.019 | |||||
|
| AA | 4 | 1.00% | 35 | 4.00% | Ref | ||
|
|
|
|
|
|
|
|
| |
| GG | 3 | 0.75% | 5 | 0.57% | 0.190 (0.033–1.114) | 3.890 | 0.049 | |
| A | 401 | 50.13% | 904 | 51.72% | 0.938 (0.794–1.109) | 0.560 | 0.456 | |
| G | 399 | 49.88% | 844 | 48.28% | ||||
|
|
|
|
| |||||
| GG vs AG + AA | 1.313 (0.312–5.523) | 0.140 | 0.709 | |||||
|
| CC | 162 | 40.50% | 428 | 48.97% | Ref | ||
| CG | 171 | 42.75% | 357 | 40.85% | 0.790 (0.611–1.022) | 3.240 | 0.072 | |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
| ||||
| GG + CG vs CC | 0.709 (0.558–0.901) | 7.920 | 0.005 | |||||
| GG vs CG + CC | 1.313 (0.312–5.523) | 0.140 | 0.709 | |||||
| rs3811047 | GG | 139 | 34.75% | 264 | 30.21% | Ref | ||
| AG | 176 | 44.00% | 389 | 44.51% | 1.164 (0.887–1.527) | 1.200 | 0.274 | |
| AA | 85 | 21.25% | 221 | 25.29% | 1.369 (0.990–1.892) | 3.630 | 0.057 | |
| G | 454 | 56.75% | 917 | 52.46% | 1.189 (1.005–1.407) | 4.060 | 0.044 | |
| A | 346 | 43.25% | 831 | 47.54% | ||||
| AA + AG vs GG | 1.231 (0.957–1.582) | 2.620 | 0.106 | |||||
| AA vs AG + GG | 0.797 (0.600–1.059) | 2.450 | 0.118 | |||||
|
| CC | 393 | 98.25% | 771 | 88.22% | Ref | ||
| CT | 2 | 0.50% | 80 | 9.15% | 20.389 (4.986–83.377) | 34.710 |
| |
| TT | 5 | 1.25% | 23 | 2.63% | 2.345 (0.885–6.215) | 3.110 | 0.078 | |
| C | 788 | 98.50% | 1622 | 92.79% | 5.101 (2.805–9.278) | 34.910 |
| |
| T | 12 | 1.50% | 126 | 7.21% | ||||
| TT + CT vs CC | 7.500 (3.455–16.282) | 35.030 |
| |||||
| TT vs CT + CC | 0.468 (0.177–1.241) | 2.440 | 0.119 | |||||
|
| GG | 340 | 85.00% | 796 | 91.08% | Ref | ||
| AG | 52 | 13.00% | 54 | 6.18% | 0.444 (0.297–0.663) | 16.420 |
| |
| AA | 8 | 2.00% | 24 | 2.75% | 1.281 (0.570–2.881) | 0.360 | 0.548 | |
| G | 732 | 91.50% | 1646 | 94.16% | 0.667 (0.485–0.918) | 6.260 | 0.012 | |
| A | 68 | 8.50% | 102 | 5.84% | ||||
| AA + AG vs GG | 0.555 (0.388–0.796) | 10.490 |
| |||||
| AA vs AG + GG | 0.723 (0.322–1.623) | 0.620 | 0.429 | |||||
| rs4849133 | TT | 311 | 77.75% | 706 | 80.78% | Ref | ||
| CT | 77 | 19.25% | 119 | 13.62% | 0.681 (0.496–0.934) | 5.720 | 0.017 | |
| CC | 12 | 3.00% | 49 | 5.61% | 1.799 (0.944–3.429) | 3.260 | 0.071 | |
| T | 699 | 87.38% | 1531 | 87.59% | 0.981 (0.762–1.263) | 0.020 | 0.881 | |
| C | 101 | 12.63% | 217 | 12.41% | ||||
| CC + CT vs TT | 0.832 (0.622–1.111) | 1.560 | 0.211 | |||||
| CC vs CT + TT | 0.521 (0.274–0.990) | 4.090 | 0.043 | |||||
| rs2708973 | GG | 364 | 91.00% | 787 | 90.05% | Ref | ||
| AG | 18 | 4.50% | 65 | 7.44% | 1.670 (0.977–2.856) | 3.580 | 0.059 | |
| AA | 18 | 4.50% | 22 | 2.52% | 0.565 (0.300–1.067) | 3.170 | 0.075 | |
| G | 746 | 93.25% | 1639 | 93.76% | 0.919 (0.656–1.287) | 0.240 | 0.622 | |
| A | 54 | 6.75% | 109 | 6.24% | ||||
| AA + AG vs GG | 1.118 (0.743–1.681) | 0.290 | 0.593 | |||||
| AA vs AG + GG |
Bold indicates significance.
Comparison of genotypic distributions between the inactive group and patients with active HBV, cirrhosis and HCC patients.
| SNPs | Genotype/Allele distribution | Inactive (n = 563) | % | Active, cirrhosis and HCC (n = 311) | % | OR (95% C.I.) | χ² | p-value |
|---|---|---|---|---|---|---|---|---|
| rs2723176 | CC | 518 | 92.01% | 276 | 88.75% | Ref | ||
| AC | 42 | 7.46% | 33 | 10.61% | 1.475 (0.914–2.380) | 2.550 | 0.110 | |
| AA | 3 | 0.53% | 2 | 0.64% | 1.251 (0.208–7.533) | 0.060 | 0.806 | |
| C | 1078 | 95.74% | 585 | 94.05% | 1.420 (0.914–2.206) | 2.460 | 0.117 | |
| A | 48 | 4.26% | 37 | 5.95% | ||||
| AA + AC vs CC | 1.460 (0.917–2.325) | 2.560 | 0.109 | |||||
| AA vs AC + CC | 0.828 (0.138–4.980) | 0.040 | 0.836 | |||||
| rs2723175 | GG | 374 | 66.43% | 217 | 69.77% | Ref | ||
| AG | 156 | 27.71% | 82 | 26.37% | 0.906 (0.661–1.242) | 0.380 | 0.539 | |
| AA | 33 | 5.86% | 12 | 3.86% | 0.627 (0.317–1.239) | 1.830 | 0.176 | |
| G | 904 | 80.28% | 516 | 82.96% | 0.837 (0.648–1.080) | 1.880 | 0.170 | |
| A | 222 | 19.72% | 106 | 17.04% | ||||
| AA + AG vs GG | 0.857 (0.636–1.155) | 1.020 | 0.312 | |||||
| AA vs AG + GG | 1.551 (0.789–3.049) | 1.650 | 0.199 | |||||
| rs2723186 | GG | 509 | 90.41% | 273 | 87.78% | Ref | ||
| AG | 30 | 5.33% | 24 | 7.72% | 1.492 (0.855–2.602) | 2.00 | 0.157 | |
| AA | 24 | 4.26% | 14 | 4.50% | 1.088 (0.554–2.137) | 0.060 | 0.807 | |
| G | 1048 | 93.07% | 570 | 91.64% | 1.226 (0.851–1.766) | 1.200 | 0.274 | |
| A | 78 | 6.93% | 52 | 8.36% | ||||
| AA + AG vs GG | 1.312 (0.845–2.038) | 1.470 | 0.226 | |||||
| AA vs AG + GG | 0.945 (0.481–1.854) | 0.030 | 0.868 | |||||
| rs2723168 | AA | 23 | 4.09% | 12 | 3.86% | Ref | ||
| AG | 537 | 95.38% | 297 | 95.50% | 1.060 (0.520–2.161) | 0.030 | 0.872 | |
| GG | 3 | 0.53% | 2 | 0.64% | 1.278 (0.187–8.720) | 0.060 | 0.802 | |
| A | 583 | 51.78% | 321 | 51.61% | 1.007 (0.828–1.225) | 0.00 | 0.946 | |
| G | 543 | 48.22% | 301 | 48.39% | ||||
| GG + AG vs AA | 1.061 (0.521–2.163) | 0.030 | 0.869 | |||||
| GG vs AG + AA | 0.828 (0.138–4.980) | 0.040 | 0.836 | |||||
| rs4364030 | CC | 268 | 47.60% | 160 | 51.45% | Ref | ||
| CG | 241 | 42.81% | 116 | 37.30% | 0.806 (0.600–1.084) | 2.040 | 0.153 | |
| GG | 54 | 9.59% | 35 | 11.25% | 1.086 (0.680–1.734) | 0.120 | 0.731 | |
| C | 777 | 69.01% | 436 | 70.10% | 0.950 (0.767–1.175) | 0.220 | 0.636 | |
| G | 349 | 30.99% | 186 | 29.90% | ||||
| GG + CG vs CC | 0.857 (0.650–1.131) | 1.190 | 0.276 | |||||
| GG vs CG + CC | 0.837 (0.534–1.312) | 0.610 | 0.436 | |||||
| rs3811047 | GG | 160 | 28.42% | 123 | 39.55% | Ref | ||
| AG | 267 | 47.42% | 151 | 48.55% | 0.736 (0.540–1.001) | 3.820 | 0.051 | |
| AA | 136 | 24.16% | 101 | 32.48% | 0.966 (0.682–1.369) | 0.040 | 0.846 | |
| G | 587 | 52.13% | 397 | 63.83% | 0.968 (0.805–1.165) | 0.120 | 0.733 | |
| A | 539 | 47.87% | 353 | 56.75% | ||||
| AA + AG vs GG | 0.813 (0.613–1.079) | 2.050 | 0.152 | |||||
| AA vs AG + GG | 0.864 (0.641–1.165) | 0.920 | 0.338 | |||||
| rs28947200 | CC | 499 | 88.63% | 272 | 87.46% | Ref | ||
| CT | 49 | 8.70% | 31 | 9.97% | 1.161 (0.723–1.863) | 0.380 | 0.537 | |
| TT | 15 | 2.66% | 8 | 2.57% | 0.978 (0.410–2.337) | 0.00 | 0.961 | |
| C | 1047 | 92.98% | 575 | 92.44% | 1.083 (0.744–1.576) | 0.170 | 0.676 | |
| T | 79 | 7.02% | 47 | 7.56% | ||||
| TT + CT vs CC | 1.118 (0.731–1.709) | 0.260 | 0.606 | |||||
| TT vs CT + CC | 1.037 (0.435–2.473) | 0.010 | 0.935 | |||||
| rs4392270 | GG | 522 | 92.72% | 274 | 88.10% | Ref | ||
| AG | 29 | 5.15% | 25 | 8.04% | 1.642 (0.943–2.860) | 3.130 | 0.077 | |
| AA | 12 | 2.13% | 12 | 3.86% | 1.905 (0.845–4.297) | 2.490 | 0.115 | |
| G | 1073 | 95.29% | 573 | 92.12% | 1.731 (1.159–2.587) | 7.330 |
| |
| A | 53 | 4.71% | 49 | 7.88% | ||||
| AA + AG vs GG | 1.719 (1.077–2.745) | 5.250 | 0.022 | |||||
| AA vs AG + GG | 0.543 (0.241–1.223) | 2.240 | 0.135 | |||||
| rs4849133 | TT | 463 | 82.24% | 243 | 78.14% | Ref | ||
| CT | 65 | 11.55% | 54 | 17.36% | 1.583 (1.069–2.345) | 5.310 | 0.021 | |
| CC | 35 | 6.22% | 14 | 4.50% | 0.762 (0.402–1.444) | 0.70 | 0.404 | |
| T | 991 | 88.01% | 540 | 86.82% | 1.115 (0.831–1.495) | 0.530 | 0.468 | |
| C | 135 | 11.99% | 82 | 13.18% | ||||
| CC + CT vs TT | 1.296 (0.918–1.829) | 2.170 | 0.141 | |||||
| CC vs CT + TT | 1.406 (0.745–2.656) | 1.110 | 0.291 | |||||
| rs2708973 | GG | 512 | 90.94% | 275 | 88.42% | Ref | ||
| AG | 39 | 6.93% | 26 | 8.36% | 1.241 (0.740–2.082) | 0.670 | 0.412 | |
| AA | 12 | 2.13% | 10 | 3.22% | 1.552 (0.662–3.637) | 1.040 | 0.309 | |
| G | 1063 | 94.40% | 576 | 92.60% | 1.347 (0.909–1.997) | 2.220 | 0.136 | |
| A | 63 | 5.60% | 46 | 7.40% | ||||
| AA + AG vs GG | 1.314 (0.837–2.063) | 1.520 | 0.234 | |||||
| AA vs AG + GG | 0.656 (0.280–1.535) | 0.960 | 0.327 |
Bold indicates significance.
Comparison of genotypic distributions between the active group and patients with cirrhosis.
| SNPs | Genotype/Allele distribution | Active (n = 217) | % | Cirrhosis (n = 64) | % | OR (95% C.I.) | χ² | p-value |
|---|---|---|---|---|---|---|---|---|
| rs2723176 | CC | 195 | 89.86% | 55 | 85.94% | Ref | ||
| AC | 21 | 9.68% | 9 | 14.06% | 1.519 (0.658–3.506) | 0.970 | 0.324 | |
| AA | 1 | 0.46% | 0 | 0.00% | 1.174 (0.047–29.225) | 0.280 | 0.596 | |
| C | 411 | 94.70% | 119 | 92.97% | 1.351 (0.609–2.999) | 0.550 | 0.457 | |
| A | 23 | 5.30% | 9 | 7.03% | ||||
| AA + AC vs CC | 1.450 (0.632–3.330) | 0.780 | 0.378 | |||||
| AA vs AC + CC | 0.894 (0.036–22.206) | 0.30 | 0.586 | |||||
| rs2723175 | GG | 148 | 68.20% | 46 | 71.88% | Ref | ||
| AG | 61 | 28.11% | 14 | 21.88% | 0.738 (0.378–1.441) | 0.790 | 0.373 | |
| AA | 8 | 3.69% | 4 | 6.25% | 1.609 (0.463–5.587) | 0.570 | 0.451 | |
| G | 357 | 82.26% | 106 | 82.81% | 0.962 (0.571–1.620) | 0.020 | 0.885 | |
| A | 77 | 17.74% | 22 | 17.19% | ||||
| AA + AG vs GG | 0.839 (0.454–1.553) | 0.310 | 0.576 | |||||
| AA vs AG + GG | 0.574 (0.167–1.972) | 0.790 | 0.373 | |||||
| rs2723186 | GG | 193 | 88.94% | 55 | 85.94% | Ref | ||
| AG | 15 | 6.91% | 6 | 9.38% | 1.404 (0.520–3.789) | 0.450 | 0.502 | |
| AA | 9 | 4.15% | 3 | 4.69% | 1.170 (0.306–4.470) | 0.050 | 0.818 | |
| G | 401 | 92.40% | 116 | 90.63% | 1.257 (0.629–2.512) | 0.420 | 0.516 | |
| A | 33 | 7.60% | 12 | 9.38% | ||||
| AA + AG vs GG | 1.316 (0.578–2.995) | 0.430 | 0.512 | |||||
| AA vs AG + GG | 0.880 (0.231–3.351) | 0.040 | 0.851 | |||||
| rs2723168 | AA | 9 | 4.15% | 3 | 4.69% | Ref | ||
| AG | 207 | 95.39% | 61 | 95.31% | 0.884 (0.232–3.368) | 0.030 | 0.857 | |
| GG | 1 | 0.46% | 0 | 0.00% | 0.905 (0.029–27.858) | 0.330 | 0.569 | |
| A | 225 | 51.84% | 67 | 52.34% | 0.980 (0.661–1.454) | 0.010 | 0.921 | |
| G | 209 | 48.16% | 61 | 47.66% | ||||
| GG + AG vs AA | 0.880 (0.231–3.351) | 0.040 | 0.851 | |||||
| GG vs AG + AA | 0.894 (0.036–22.206) | 0.30 | 0.586 | |||||
| rs4364030 | CC | 115 | 53.00% | 30 | 46.88% | Ref | ||
| CG | 81 | 37.33% | 25 | 39.06% | 1.183 (0.648–2.160) | 0.30 | 0.584 | |
| GG | 21 | 9.68% | 9 | 14.06% | 1.643 (0.683–3.954) | 1.240 | 0.265 | |
| C | 311 | 71.66% | 85 | 66.41% | 1.279 (0.839–1.951) | 1.310 | 0.252 | |
| G | 123 | 28.34% | 43 | 33.59% | ||||
| GG + CG vs CC | 1.278 (0.731–2.234) | 0.740 | 0.389 | |||||
| GG vs CG + CC | 0.655 (0.284–1.511) | 1.00 | 0.318 | |||||
| rs3811047 | GG | 73 | 33.64% | 19 | 29.69% | Ref | ||
| AG | 84 | 38.71% | 29 | 45.31% | 1.326 (0.687–2.561) | 0.710 | 0.399 | |
| AA | 60 | 27.65% | 16 | 25.00% | 1.025 (0.485–2.164) | 0.00 | 0.949 | |
| G | 230 | 53.00% | 67 | 52.34% | 1.026 (0.692–1.523) | 0.020 | 0.897 | |
| A | 204 | 47.00% | 61 | 47.66% | ||||
| AA + AG vs GG | 1.201 (0.655–2.200) | 0.350 | 0.554 | |||||
| AA vs AG + GG | 1.146 (0.605–2.173) | 0.180 | 0.675 | |||||
| rs28947200 | CC | 194 | 89.40% | 55 | 85.94% | Ref | ||
| CT | 17 | 7.83% | 8 | 12.50% | 1.660 (0.680–4.050) | 1.260 | 0.262 | |
| TT | 6 | 2.76% | 1 | 1.56% | 0.588 (0.069–4.987) | 0.240 | 0.622 | |
| C | 405 | 93.32% | 118 | 92.19% | 1.184 (0.560–2.499) | 0.20 | 0.658 | |
| T | 29 | 6.68% | 10 | 7.81% | ||||
| TT + CT vs CC | 1.380 (0.604–3.155) | 0.590 | 0.443 | |||||
| TT vs CT + CC | 1.791 (0.212–15.160) | 0.290 | 0.587 | |||||
| rs4392270 | GG | 188 | 86.64% | 58 | 90.63% | Ref | ||
| AG | 18 | 8.29% | 5 | 7.81% | 0.900 (0.320–2.531) | 0.040 | 0.842 | |
| AA | 11 | 5.07% | 1 | 1.56% | 0.295 (0.037–2.331) | 1.510 | 0.219 | |
| G | 394 | 90.78% | 121 | 94.53% | 0.570 (0.249–1.305) | 1.810 | 0.178 | |
| A | 40 | 9.22% | 7 | 5.47% | ||||
| AA + AG vs GG | 0.671 (0.265–1.695) | 0.720 | 0.396 | |||||
| AA vs AG + GG | 3.364 (0.426–26.566) | 1.490 | 0.223 | |||||
| rs4849133 | TT | 177 | 81.57% | 46 | 71.88% | Ref | ||
| CT | 31 | 14.29% | 16 | 25.00% | 1.986 (1.001–3.940) | 3.950 | 0.047 | |
| CC | 9 | 4.15% | 2 | 3.13% | 0.855 (0.179–4.094) | 0.040 | 0.844 | |
| T | 385 | 88.71% | 108 | 84.38% | 1.455 (0.829–2.553) | 1.720 | 0.189 | |
| C | 49 | 11.29% | 20 | 15.63% | ||||
| CC + CT vs TT | 1.732 (0.909–3.297) | 2.830 | 0.092 | |||||
| CC vs CT + TT | 1.341 (0.282–6.372) | 0.140 | 0.711 | |||||
| rs2708973 | GG | 190 | 87.56% | 59 | 92.19% | Ref | ||
| AG | 20 | 9.22% | 3 | 4.69% | 0.483 (0.139–1.683) | 1.360 | 0.244 | |
| AA | 7 | 3.23% | 2 | 3.13% | 0.920 (0.186–4.550) | 0.010 | 0.919 | |
| G | 400 | 92.17% | 121 | 94.53% | 0.681 (0.294–1.574) | 0.820 | 0.366 | |
| A | 34 | 7.83% | 7 | 5.47% | ||||
| AA + AG vs GG | 0.596 (0.220–1.618) | 1.050 | 0.306 | |||||
| AA vs AG + GG | 1.033 (0.209–5.102) | 0.00 | 0.968 |
Comparison of genotypic distributions between the active group and patients with cirrhosis and HCC.
| SNPs | Genotype/Allele distribution | Active (n = 217) | % | Cirrhosis + HCC (n = 94) | % | OR (95% C.I.) | χ² | p-value |
|---|---|---|---|---|---|---|---|---|
| rs2723176 | CC | 195 | 89.86% | 81 | 86.17% | Ref | ||
| AC | 21 | 9.68% | 12 | 12.77% | 1.376 (0.647–2.927) | 0.690 | 0.406 | |
| AA | 1 | 0.46% | 1 | 1.06% | 2.407 (0.149–38.956) | 0.410 | 0.523 | |
| C | 411 | 94.70% | 174 | 92.55% | 1.438 (0.723–2.860) | 1.080 | 0.298 | |
| A | 23 | 5.30% | 14 | 7.45% | ||||
| AA + AC vs CC | 1.423 (0.684–2.961) | 0.890 | 0.344 | |||||
| AA vs AC + CC | 0.431 (0.027–6.957) | 0.370 | 0.541 | |||||
| rs2723175 | GG | 148 | 68.20% | 69 | 73.40% | Ref | ||
| AG | 61 | 28.11% | 21 | 22.34% | 0.738 (0.417–1.309) | 1.080 | 0.298 | |
| AA | 8 | 3.69% | 4 | 4.26% | 1.072 (0.312–3.683) | 0.010 | 0.911 | |
| G | 357 | 82.26% | 159 | 84.57% | 0.846 (0.531–1.348) | 0.50 | 0.480 | |
| A | 77 | 17.74% | 29 | 15.43% | ||||
| AA + AG vs GG | 0.777 (0.453–1.333) | 0.840 | 0.359 | |||||
| AA vs AG + GG | 0.861 (0.253–2.933) | 0.060 | 0.811 | |||||
| rs2723186 | GG | 193 | 88.94% | 80 | 85.11% | Ref | ||
| AG | 15 | 6.91% | 8 | 8.51% | 1.448 (0.609–3.443) | 0.710 | 0.401 | |
| AA | 9 | 4.15% | 5 | 5.32% | 1.340 (0.436–4.124) | 0.260 | 0.608 | |
| G | 401 | 92.40% | 168 | 89.36% | 1.366 (0.756–2.470) | 1.070 | 0.300 | |
| A | 33 | 7.60% | 18 | 9.57% | ||||
| AA + AG vs GG | 1.407 (0.693–2.859) | 0.90 | 0.343 | |||||
| AA vs AG + GG | 0.770 (0.251–2.363) | 0.210 | 0.647 | |||||
| rs2723168 | AA | 9 | 4.15% | 3 | 3.19% | Ref | ||
| AG | 207 | 95.39% | 90 | 95.74% | 1.304 (0.345–4.931) | 0.150 | 0.695 | |
| GG | 1 | 0.46% | 1 | 1.06% | 3.00 (0.140–64.262) | 0.530 | 0.468 | |
| A | 225 | 51.84% | 96 | 51.06% | 1.032 (0.733–1.453) | 0.030 | 0.858 | |
| G | 209 | 48.16% | 92 | 48.94% | ||||
| GG + AG vs AA | 1.312 (0.347–4.961) | 0.160 | 0.688 | |||||
| GG vs AG + AA | 0.431 (0.027–6.957) | 0.370 | 0.541 | |||||
| rs4364030 | CC | 115 | 53.00% | 45 | 47.87% | Ref | ||
| CG | 81 | 37.33% | 35 | 37.23% | 1.104 (0.653–1.867) | 0.14 | 0.711 | |
| GG | 21 | 9.68% | 14 | 14.89% | 1.704 (0.798–3.639) | 1.92 | 0.166 | |
| C | 311 | 71.66% | 125 | 66.49% | 1.274 (0.882–1.841) | 1.67 | 0.196 | |
| G | 123 | 28.34% | 63 | 33.51% | ||||
| GG + CG vs CC | 1.228 (0.756–1.993) | 0.690 | 0.406 | |||||
| GG vs CG + CC | 0.612 (0.297–1.264) | 1.790 | 0.181 | |||||
| rs3811047 | GG | 73 | 33.64% | 31 | 32.98% | Ref | ||
| AG | 84 | 38.71% | 38 | 40.43% | 1.065 (0.603–1.881) | 0.050 | 0.827 | |
| AA | 60 | 27.65% | 25 | 26.60% | 0.981 (0.5 24–1.838) | 0.00 | 0.953 | |
| G | 230 | 53.00% | 100 | 53.19% | 0.992 (0.704–1.398) | 0.00 | 0.964 | |
| A | 204 | 47.00% | 88 | 46.81% | ||||
| AA + AG vs GG | 1.030 (0.616–1.723) | 0.010 | 0.909 | |||||
| AA vs AG + GG | 1.055 (0.611–1.820) | 0.040 | 0.848 | |||||
| rs28947200 | CC | 194 | 89.40% | 78 | 82.98% | Ref | ||
| CT | 17 | 7.83% | 14 | 14.89% | 2.048 (0.963–4.356) | 3.580 | 0.059 | |
| TT | 6 | 2.76% | 2 | 2.13% | 0.829 (0.164–4.197) | 0.050 | 0.820 | |
| C | 405 | 93.32% | 170 | 90.43% | 1.479 (0.800–2.735) | 1.570 | 0.210 | |
| T | 29 | 6.68% | 18 | 9.57% | ||||
| TT + CT vs CC | 1.730 (0.868–3.450) | 2.470 | 0.116 | |||||
| TT vs CT + CC | 1.308 (0.259–6.603) | 0.110 | 0.744 | |||||
| rs4392270 | GG | 188 | 86.64% | 86 | 91.49% | Ref | ||
| AG | 18 | 8.29% | 7 | 7.45% | 0.850 (0.342–2.11) | 0.120 | 0.726 | |
| AA | 11 | 5.07% | 1 | 1.06% | 0.199 (0.025–1.564) | 2.890 | 0.089 | |
| G | 394 | 90.78% | 179 | 95.21% | 0.495 (0.235–1.043) | 3.550 | 0.059 | |
| A | 40 | 9.22% | 9 | 4.79% | ||||
| AA + AG vs GG | 0.603 (0.265–1.374) | 1.470 | 0.225 | |||||
| AA vs AG + GG | 4.966 (0.632–39.030) | 2.840 | 0.092 | |||||
| rs4849133 | TT | 177 | 81.57% | 66 | 70.21% | Ref | ||
| CT | 31 | 14.29% | 23 | 24.47% | 1.990 (1.082–3.658) | 5.010 | 0.025 | |
| CC | 9 | 4.15% | 5 | 5.32% | 1.490 (0.482–4.608) | 0.480 | 0.486 | |
| T | 385 | 88.71% | 155 | 82.45% | 1.673 (1.036–2.701) | 4.50 | 0.033 | |
| C | 49 | 11.29% | 33 | 17.55% | ||||
| CC + CT vs TT | 1.877 (1.073–3.285) | 4.950 | 0.026 | |||||
| CC vs CT + TT | 0.770 (0.251–2.363) | 0.210 | 0.647 | |||||
| rs2708973 | GG | 190 | 87.56% | 85 | 90.43% | Ref | ||
| AG | 20 | 9.22% | 6 | 6.38% | 0.671 (0.260–1.730) | 0.690 | 0.406 | |
| AA | 7 | 3.23% | 3 | 3.19% | 0.958 (0.242–3.794) | 0.00 | 0.951 | |
| G | 400 | 92.17% | 176 | 93.62% | 0.802 (0.406–1.586) | 0.40 | 0.525 | |
| A | 34 | 7.83% | 12 | 6.38% | ||||
| AA + AG vs GG | 0.745 (0.336–1.653) | 0.530 | 0.468 | |||||
| AA vs AG + GG | 1.011 (0.256–3.998) | 0.00 | 0.987 |
Haplotype frequencies of IL-37 between the clearance group and patients infected with HBV.
| Haplotypes | Freq. | Case, Control Ratio Counts* | Case, Control Frequencies* | Chi Square | p-value | ||
|---|---|---|---|---|---|---|---|
| rs4364030 | rs3811047 | rs2723176 | |||||
| C | A | C | 0.402 | 748.1: 999.9, 275.4: 524.6 | 0.428, 0.344 | 16.008 |
|
| G | G | C | 0.313 | 503.5: 1244.5, 293.4: 506.6 | 0.288, 0.367 | 15.81 |
|
| C | G | C | 0.21 | 383.4: 1364.6, 151.9: 648.1 | 0.219, 0.190 | 2.883 | 0.089 |
| C | A | A | 0.055 | 77.6: 1670.4, 62.1: 737.9 | 0.044, 0.078 | 11.724 |
|
| G | A | C | 0.014 | 28.0: 1720.0, 7.4: 792.6 | 0.016, 0.009 | 1.858 | 0.173 |
*Case = HBV-Infected patients, Control = Clearance group. Bold indicate significance.