Literature DB >> 31066656

Yersinia hibernica sp. nov., isolated from pig-production environments.

Scott V Nguyen1, Dechamma Mundanda Muthappa1, Daniel Hurley1, Orla Donoghue2, Evonne McCabe1, João Anes1, Kirsten Schaffer2, Brenda P Murphy3, Jim F Buckley3, Séamus Fanning1.   

Abstract

A Gram-stain-negative, rod-shaped strain isolated from pig-production environments was identified as a new species within the genus Yersinia using multifaceted genomic and biochemical approaches. The genome of this strain was closed using a hybrid assembly approach combining both high accuracy short read sequencing data with long read sequencing technology. Phylogenetic analysis of the 16S rRNA gene showed ~98 % similarity to Yersinia kristensenii and ~98 % similarity to Yersinia enterocolitica. Average nucleotide identity (OrthoANI) values were calculated as 85.79 % to Y. kristensenii ATCC 33638T and 85.73 % to Y. enterocolitica ATCC 9610T thereby providing evidence that this isolate should be considered as a novel species. The type strain is CFS1934T (=NCTC 14222T=LMG 31076T).

Entities:  

Keywords:  Illumina; Ireland; MinION; Oxford Nanopore Technologies; Yersinia

Mesh:

Substances:

Year:  2019        PMID: 31066656     DOI: 10.1099/ijsem.0.003422

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  3 in total

1.  Comparative genomic insights into Yersinia hibernica - a commonly misidentified Yersinia enterocolitica-like organism.

Authors:  Scott Van Nguyen; Dechamma Mundanda Muthappa; Athmanya K Eshwar; James F Buckley; Brenda P Murphy; Roger Stephan; Angelika Lehner; Séamus Fanning
Journal:  Microb Genom       Date:  2020-07-23

2.  Genus-wide Yersinia core-genome multilocus sequence typing for species identification and strain characterization.

Authors:  Cyril Savin; Alexis Criscuolo; Julien Guglielmini; Anne-Sophie Le Guern; Elisabeth Carniel; Javier Pizarro-Cerdá; Sylvain Brisse
Journal:  Microb Genom       Date:  2019-09-30

3.  Yersinia artesiana sp. nov., Yersinia proxima sp. nov., Yersinia alsatica sp. nov., Yersina vastinensis sp. nov., Yersinia thracica sp. nov. and Yersinia occitanica sp. nov., isolated from humans and animals.

Authors:  Anne-Sophie Le Guern; Cyril Savin; Hilde Angermeier; Sylvie Brémont; Dominique Clermont; Estelle Mühle; Petya Orozova; Hristo Najdenski; Javier Pizarro-Cerdá
Journal:  Int J Syst Evol Microbiol       Date:  2020-08-27       Impact factor: 2.747

  3 in total

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