Literature DB >> 31065570

Deep learning-based three-dimensional segmentation of the prostate on computed tomography images.

Maysam Shahedi1, Martin Halicek1,2, James D Dormer1, David M Schuster3, Baowei Fei1,4,5.   

Abstract

Segmentation of the prostate in computed tomography (CT) is used for planning and guidance of prostate treatment procedures. However, due to the low soft-tissue contrast of the images, manual delineation of the prostate on CT is a time-consuming task with high interobserver variability. We developed an automatic, three-dimensional (3-D) prostate segmentation algorithm based on a customized U-Net architecture. Our dataset contained 92 3-D abdominal CT scans from 92 patients, of which 69 images were used for training and validation and the remaining for testing the convolutional neural network model. Compared to manual segmentation by an expert radiologist, our method achieved 83 % ± 6 % for Dice similarity coefficient (DSC), 2.3 ± 0.6    mm for mean absolute distance (MAD), and 1.9 ± 4.0    cm 3 for signed volume difference ( Δ V ). The average recorded interexpert difference measured on the same test dataset was 92% (DSC), 1.1 mm (MAD), and 2.1    cm 3 ( Δ V ). The proposed algorithm is fast, accurate, and robust for 3-D segmentation of the prostate on CT images.

Entities:  

Keywords:  computed tomography; convolutional neural network; deep learning; image segmentation; prostate

Year:  2019        PMID: 31065570      PMCID: PMC6499404          DOI: 10.1117/1.JMI.6.2.025003

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  15 in total

1.  Semi-automatic segmentation of prostate in CT images via coupled feature representation and spatial-constrained transductive lasso.

Authors:  Yinghuan Shi; Yaozong Gao; Shu Liao; Daoqiang Zhang; Yang Gao; Dinggang Shen
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2015-11       Impact factor: 6.226

2.  Prostate volume contouring: a 3D analysis of segmentation using 3DTRUS, CT, and MR.

Authors:  Wendy L Smith; Craig Lewis; Glenn Bauman; George Rodrigues; David D'Souza; Robert Ash; Derek Ho; Varagur Venkatesan; Dónal Downey; Aaron Fenster
Journal:  Int J Radiat Oncol Biol Phys       Date:  2007-03-15       Impact factor: 7.038

3.  Spatially varying accuracy and reproducibility of prostate segmentation in magnetic resonance images using manual and semiautomated methods.

Authors:  Maysam Shahedi; Derek W Cool; Cesare Romagnoli; Glenn S Bauman; Matthew Bastian-Jordan; Eli Gibson; George Rodrigues; Belal Ahmad; Michael Lock; Aaron Fenster; Aaron D Ward
Journal:  Med Phys       Date:  2014-11       Impact factor: 4.071

4.  A Learning-Based CT Prostate Segmentation Method via Joint Transductive Feature Selection and Regression.

Authors:  Yinghuan Shi; Yaozong Gao; Shu Liao; Daoqiang Zhang; Yang Gao; Dinggang Shen
Journal:  Neurocomputing       Date:  2016-01-15       Impact factor: 5.719

5.  Prostate Segmentation in CT Images via Spatial-Constrained Transductive Lasso.

Authors:  Yinghuan Shi; Shu Liao; Yaozong Gao; Daoqiang Zhang; Yang Gao; Dinggang Shen
Journal:  Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit       Date:  2013

6.  Locally-constrained boundary regression for segmentation of prostate and rectum in the planning CT images.

Authors:  Yeqin Shao; Yaozong Gao; Qian Wang; Xin Yang; Dinggang Shen
Journal:  Med Image Anal       Date:  2015-10-02       Impact factor: 8.545

7.  PSNet: prostate segmentation on MRI based on a convolutional neural network.

Authors:  Zhiqiang Tian; Lizhi Liu; Zhenfeng Zhang; Baowei Fei
Journal:  J Med Imaging (Bellingham)       Date:  2018-01-17

8.  A combined learning algorithm for prostate segmentation on 3D CT images.

Authors:  Ling Ma; Rongrong Guo; Guoyi Zhang; David M Schuster; Baowei Fei
Journal:  Med Phys       Date:  2017-09-22       Impact factor: 4.071

9.  Cancer Statistics, 2017.

Authors:  Rebecca L Siegel; Kimberly D Miller; Ahmedin Jemal
Journal:  CA Cancer J Clin       Date:  2017-01-05       Impact factor: 508.702

10.  Combining Population and Patient-Specific Characteristics for Prostate Segmentation on 3D CT Images.

Authors:  Ling Ma; Rongrong Guo; Zhiqiang Tian; Rajesh Venkataraman; Saradwata Sarkar; Xiabi Liu; Funmilayo Tade; David M Schuster; Baowei Fei
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03-21
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  2 in total

1.  Three-dimensional prostate CT segmentation through fine-tuning of a pre-trained neural network using no reference labeling.

Authors:  Kayla Caughlin; Maysam Shahedi; Jonathan E Shoag; Christopher Barbieri; Daniel Margolis; Baowei Fei
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2021-02-15

2.  Deep Learning-Based Three-Dimensional Oral Conical Beam Computed Tomography for Diagnosis.

Authors:  Yangdong Lin; Miao He
Journal:  J Healthc Eng       Date:  2021-09-21       Impact factor: 2.682

  2 in total

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