Literature DB >> 31065412

Label-free detection of nasopharyngeal and liver cancer using surface-enhanced Raman spectroscopy and partial lease squares combined with support vector machine.

Yun Yu1,2, Yating Lin1, Chaoxian Xu1, Kecan Lin3, Qing Ye4, Xiaoyan Wang4, Shusen Xie1, Rong Chen1, Juqiang Lin1.   

Abstract

In this paper, we investigated the feasibility of using surface enhanced Raman spectroscopy (SERS) and multivariate analysis method to discriminate liver cancer and nasopharyngeal cancer from healthy volunteers. SERS measurements were performed on serum protein samples from 104 liver cancer patients, 100 nasopharyngeal cancer patients, and 95 healthy volunteers. Two dimensionality reduction methods, principal component analysis (PCA) and partial least square (PLS) were compared, and the results indicated that the performance of PLS is superior to that of PCA. When the number of components was compressed to 3 by PLS, support vector machine (SVM) with a Gaussian radial basis function (RBF) was employed to classify various cancers simultaneously. Based on the PLS-SVM algorithm, high diagnostic accuracies of 95.09% and 90.67% were achieved from the training set and the unknown testing set, respectively. The results of this exploratory work demonstrate that serum protein SERS technology combined with PLS-SVM diagnostic algorithm has great potential for the noninvasive screening of cancer.

Entities:  

Year:  2018        PMID: 31065412      PMCID: PMC6490983          DOI: 10.1364/BOE.9.006053

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  17 in total

1.  Simultaneous fingerprint and high-wavenumber confocal Raman spectroscopy enhances early detection of cervical precancer in vivo.

Authors:  Shiyamala Duraipandian; Wei Zheng; Joseph Ng; Jeffrey J H Low; A Ilancheran; Zhiwei Huang
Journal:  Anal Chem       Date:  2012-06-20       Impact factor: 6.986

2.  Automated autofluorescence background subtraction algorithm for biomedical Raman spectroscopy.

Authors:  Jianhua Zhao; Harvey Lui; David I McLean; Haishan Zeng
Journal:  Appl Spectrosc       Date:  2007-11       Impact factor: 2.388

3.  A novel blood plasma analysis technique combining membrane electrophoresis with silver nanoparticle-based SERS spectroscopy for potential applications in noninvasive cancer detection.

Authors:  Juqiang Lin; Rong Chen; Shangyuan Feng; Jianji Pan; Yongzeng Li; Guannan Chen; Min Cheng; Zufang Huang; Yun Yu; Haishan Zeng
Journal:  Nanomedicine       Date:  2011-02-17       Impact factor: 5.307

4.  Study of support vector machine and serum surface-enhanced Raman spectroscopy for noninvasive esophageal cancer detection.

Authors:  Shao-Xin Li; Qiu-Yao Zeng; Lin-Fang Li; Yan-Jiao Zhang; Ming-Ming Wan; Zhi-Ming Liu; Hong-Lian Xiong; Zhou-Yi Guo; Song-Hao Liu
Journal:  J Biomed Opt       Date:  2013-02       Impact factor: 3.170

5.  Colorectal cancer detection by gold nanoparticle based surface-enhanced Raman spectroscopy of blood serum and statistical analysis.

Authors:  Duo Lin; Shangyuan Feng; Jianji Pan; Yanping Chen; Juqiang Lin; Guannan Chen; Shusen Xie; Haishan Zeng; Rong Chen
Journal:  Opt Express       Date:  2011-07-04       Impact factor: 3.894

6.  Nasopharyngeal cancer detection based on blood plasma surface-enhanced Raman spectroscopy and multivariate analysis.

Authors:  Shangyuan Feng; Rong Chen; Juqiang Lin; Jianji Pan; Guannan Chen; Yongzeng Li; Min Cheng; Zufang Huang; Jiesi Chen; Haishan Zeng
Journal:  Biosens Bioelectron       Date:  2010-04-01       Impact factor: 10.618

7.  Cancer statistics, 2014.

Authors:  Rebecca Siegel; Jiemin Ma; Zhaohui Zou; Ahmedin Jemal
Journal:  CA Cancer J Clin       Date:  2014-01-07       Impact factor: 508.702

8.  Metabolomic NMR fingerprinting to identify and predict survival of patients with metastatic colorectal cancer.

Authors:  Ivano Bertini; Stefano Cacciatore; Benny V Jensen; Jakob V Schou; Julia S Johansen; Mogens Kruhøffer; Claudio Luchinat; Dorte L Nielsen; Paola Turano
Journal:  Cancer Res       Date:  2011-11-11       Impact factor: 12.701

Review 9.  Plasmonic nanoprobes for SERS biosensing and bioimaging.

Authors:  Tuan Vo-Dinh; Hsin-Neng Wang; Jonathan Scaffidi
Journal:  J Biophotonics       Date:  2010-01       Impact factor: 3.207

10.  Label-free blood plasma test based on surface-enhanced Raman scattering for tumor stages detection in nasopharyngeal cancer.

Authors:  Duo Lin; Jianji Pan; Hao Huang; Guannan Chen; Sufang Qiu; Hong Shi; Weiwei Chen; Yun Yu; Shangyuan Feng; Rong Chen
Journal:  Sci Rep       Date:  2014-04-23       Impact factor: 4.379

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  5 in total

1.  Decoding Optical Data with Machine Learning.

Authors:  Jie Fang; Anand Swain; Rohit Unni; Yuebing Zheng
Journal:  Laser Photon Rev       Date:  2020-12-23       Impact factor: 13.138

2.  Rapid detection of hysteromyoma and cervical cancer based on serum surface-enhanced Raman spectroscopy and a support vector machine.

Authors:  Xiangxiang Zheng; Guohua Wu; Jing Wang; Longfei Yin; Xiaoyi Lv
Journal:  Biomed Opt Express       Date:  2022-03-04       Impact factor: 3.562

3.  Surface-enhanced Raman spectroscopy analysis of mast cell degranulation induced by low-intensity laser.

Authors:  Mengmeng Zheng; Siqi Gao; Yun Yu; Jianshu Xu; Zufang Huang; Juan Li; Shusen Xie; Juqiang Lin
Journal:  IET Nanobiotechnol       Date:  2019-12       Impact factor: 1.847

4.  Machine Learning-Assisted Sampling of Surfance-Enhanced Raman Scattering (SERS) Substrates Improve Data Collection Efficiency.

Authors:  Tatu Rojalin; Dexter Antonio; Ambarish Kulkarni; Randy P Carney
Journal:  Appl Spectrosc       Date:  2021-08-03       Impact factor: 2.388

5.  Comparison of Surface-Enhanced Raman Scattering Properties of Serum and Urine for the Detection of Chronic Kidney Disease in Patients.

Authors:  Ming Zong; Lan Zhou; Qiunong Guan; Duo Lin; Jianhua Zhao; Hualin Qi; David Harriman; Lieying Fan; Haishan Zeng; Caigan Du
Journal:  Appl Spectrosc       Date:  2020-10-29       Impact factor: 2.388

  5 in total

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