Literature DB >> 31065338

Molecular modelling as the spark for active learning approaches for interdisciplinary biology teaching.

A Taly1, F Nitti2, M Baaden1, S Pasquali3.   

Abstract

We present here an interdisciplinary workshop on the subject of biomolecules offered to undergraduate and high school students with the aim of boosting their interest toward all areas of science contributing to the study of life. The workshop involves mathematics, physics, chemistry, computer science and biology. Based on our own areas of research, molecular modelling is chosen as the central axis as it involves all disciplines. To provide a strong biological motivation for the study of the dynamics of biomolecules, the theme of the workshop is the origin of life. All sessions are built around active pedagogy, including games, and a final poster presentation.

Keywords:  active learning; education; molecular modelling

Year:  2019        PMID: 31065338      PMCID: PMC6501338          DOI: 10.1098/rsfs.2018.0065

Source DB:  PubMed          Journal:  Interface Focus        ISSN: 2042-8898            Impact factor:   3.906


  11 in total

1.  Coarse-Grained HiRE-RNA Model for ab Initio RNA Folding beyond Simple Molecules, Including Noncanonical and Multiple Base Pairings.

Authors:  Tristan Cragnolini; Yoann Laurin; Philippe Derreumaux; Samuela Pasquali
Journal:  J Chem Theory Comput       Date:  2015-06-16       Impact factor: 6.006

2.  Are biologists getting the mathematical training they need in college?

Authors:  Jill A Marshall; Pablo Durán
Journal:  Biochem Mol Biol Educ       Date:  2018-11-02       Impact factor: 1.160

3.  RNA design rules from a massive open laboratory.

Authors:  Jeehyung Lee; Wipapat Kladwang; Minjae Lee; Daniel Cantu; Martin Azizyan; Hanjoo Kim; Alex Limpaecher; Sungroh Yoon; Adrien Treuille; Rhiju Das
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-27       Impact factor: 11.205

4.  High school biology students use of visual molecular dynamics as an authentic tool for learning about modeling as a professional scientific practice.

Authors:  Stephen R Burgin; Jennifer Oramous; Michael Kaminski; Linda Stocker; Mahmoud Moradi
Journal:  Biochem Mol Biol Educ       Date:  2018-02-19       Impact factor: 1.160

5.  What Can Human-Guided Simulations Bring to RNA Folding?

Authors:  Liuba Mazzanti; Sébastien Doutreligne; Cedric Gageat; Philippe Derreumaux; Antoine Taly; Marc Baaden; Samuela Pasquali
Journal:  Biophys J       Date:  2017-06-22       Impact factor: 4.033

6.  Predicting protein structures with a multiplayer online game.

Authors:  Seth Cooper; Firas Khatib; Adrien Treuille; Janos Barbero; Jeehyung Lee; Michael Beenen; Andrew Leaver-Fay; David Baker; Zoran Popović; Foldit Players
Journal:  Nature       Date:  2010-08-05       Impact factor: 49.962

7.  Ten simple rules to create a serious game, illustrated with examples from structural biology.

Authors:  Marc Baaden; Olivier Delalande; Nicolas Ferey; Samuela Pasquali; Jérôme Waldispühl; Antoine Taly
Journal:  PLoS Comput Biol       Date:  2018-03-08       Impact factor: 4.475

8.  Game on, science - how video game technology may help biologists tackle visualization challenges.

Authors:  Zhihan Lv; Alex Tek; Franck Da Silva; Charly Empereur-mot; Matthieu Chavent; Marc Baaden
Journal:  PLoS One       Date:  2013-03-06       Impact factor: 3.240

9.  Making authentic science accessible-the benefits and challenges of integrating bioinformatics into a high-school science curriculum.

Authors:  Yossy Machluf; Hadas Gelbart; Shifra Ben-Dor; Anat Yarden
Journal:  Brief Bioinform       Date:  2016-01-22       Impact factor: 11.622

10.  Sampling molecular conformations and dynamics in a multiuser virtual reality framework.

Authors:  Michael O'Connor; Helen M Deeks; Edward Dawn; Oussama Metatla; Anne Roudaut; Matthew Sutton; Lisa May Thomas; Becca Rose Glowacki; Rebecca Sage; Philip Tew; Mark Wonnacott; Phil Bates; Adrian J Mulholland; David R Glowacki
Journal:  Sci Adv       Date:  2018-06-29       Impact factor: 14.136

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  1 in total

1.  PyRosetta Jupyter Notebooks Teach Biomolecular Structure Prediction and Design.

Authors:  Kathy H Le; Jared Adolf-Bryfogle; Jason C Klima; Sergey Lyskov; Jason Labonte; Steven Bertolani; Shourya S Roy Burman; Andrew Leaver-Fay; Brian Weitzner; Jack Maguire; Ramya Rangan; Matt A Adrianowycz; Rebecca F Alford; Aleexsan Adal; Morgan L Nance; Yuanhan Wu; Jordan Willis; Daniel W Kulp; Rhiju Das; Roland L Dunbrack; William Schief; Brian Kuhlman; Justin B Siegel; Jeffrey J Gray
Journal:  Biophysicist (Rockv)       Date:  2021-04-14
  1 in total

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