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Literature DB >> 31059562

The Whole-Genome Sequence of the Coral Acropora millepora.

Hua Ying¹, David C Hayward¹, Ira Cooke², Weiwen Wang¹, Aurelie Moya³, Kirby R Siemering⁴, Susanne Sprungala^2,3, Eldon E Ball^1,3, Sylvain Forêt^1,3, David J Miller^2,3.

Abstract

Entities: Species

Keywords: zzm321990 Acropora digitiferazzm321990 ; zzm321990 Acropora milleporazzm321990 ; WGS; genome

Mesh：

Year: 2019 PMID： 31059562 PMCID： PMC6501875 DOI： 10.1093/gbe/evz077

Source DB: PubMed Journal: Genome Biol Evol ISSN： 1759-6653 Impact factor: 3.416

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32 in total

1. One-third of reef-building corals face elevated extinction risk from climate change and local impacts.

Authors: Kent E Carpenter; Muhammad Abrar; Greta Aeby; Richard B Aronson; Stuart Banks; Andrew Bruckner; Angel Chiriboga; Jorge Cortés; J Charles Delbeek; Lyndon Devantier; Graham J Edgar; Alasdair J Edwards; Douglas Fenner; Héctor M Guzmán; Bert W Hoeksema; Gregor Hodgson; Ofri Johan; Wilfredo Y Licuanan; Suzanne R Livingstone; Edward R Lovell; Jennifer A Moore; David O Obura; Domingo Ochavillo; Beth A Polidoro; William F Precht; Miledel C Quibilan; Clarissa Reboton; Zoe T Richards; Alex D Rogers; Jonnell Sanciangco; Anne Sheppard; Charles Sheppard; Jennifer Smith; Simon Stuart; Emre Turak; John E N Veron; Carden Wallace; Ernesto Weil; Elizabeth Wood
Journal: Science Date: 2008-07-10 Impact factor: 47.728

2. A general method for isolation of high molecular weight DNA from eukaryotes.

Authors: N Blin; D W Stafford
Journal: Nucleic Acids Res Date: 1976-09 Impact factor: 16.971

3. Using the Acropora digitifera genome to understand coral responses to environmental change.

Authors: Chuya Shinzato; Eiichi Shoguchi; Takeshi Kawashima; Mayuko Hamada; Kanako Hisata; Makiko Tanaka; Manabu Fujie; Mayuki Fujiwara; Ryo Koyanagi; Tetsuro Ikuta; Asao Fujiyama; David J Miller; Nori Satoh
Journal: Nature Date: 2011-07-24 Impact factor: 49.962

4. Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO₂-driven acidification during the initiation of calcification.

Authors: A Moya; L Huisman; E E Ball; D C Hayward; L C Grasso; C M Chua; H N Woo; J-P Gattuso; S Forêt; D J Miller
Journal: Mol Ecol Date: 2012-04-10 Impact factor: 6.185

5. CRISPR/Cas9-mediated genome editing in a reef-building coral.

Authors: Phillip A Cleves; Marie E Strader; Line K Bay; John R Pringle; Mikhail V Matz
Journal: Proc Natl Acad Sci U S A Date: 2018-04-25 Impact factor: 11.205

6. snail expression during embryonic development of the coral Acropora: blurring the diploblast/triploblast divide?

Authors: David C Hayward; David J Miller; Eldon E Ball
Journal: Dev Genes Evol Date: 2004-03-17 Impact factor: 0.900

7. MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects.

Authors: Carson Holt; Mark Yandell
Journal: BMC Bioinformatics Date: 2011-12-22 Impact factor: 3.307

8. Assessing the gene space in draft genomes.

Authors: Genis Parra; Keith Bradnam; Zemin Ning; Thomas Keane; Ian Korf
Journal: Nucleic Acids Res Date: 2008-11-28 Impact factor: 16.971

9. Sox genes in the coral Acropora millepora: divergent expression patterns reflect differences in developmental mechanisms within the Anthozoa.

Authors: Chuya Shinzato; Akira Iguchi; David C Hayward; Ulrich Technau; Eldon E Ball; David J Miller
Journal: BMC Evol Biol Date: 2008-11-12 Impact factor: 3.260

10. The Coral Trait Database, a curated database of trait information for coral species from the global oceans.

Authors: Joshua S Madin; Kristen D Anderson; Magnus Heide Andreasen; Tom C L Bridge; Stephen D Cairns; Sean R Connolly; Emily S Darling; Marcela Diaz; Daniel S Falster; Erik C Franklin; Ruth D Gates; Aaron Harmer; Mia O Hoogenboom; Danwei Huang; Sally A Keith; Matthew A Kosnik; Chao-Yang Kuo; Janice M Lough; Catherine E Lovelock; Osmar Luiz; Julieta Martinelli; Toni Mizerek; John M Pandolfi; Xavier Pochon; Morgan S Pratchett; Hollie M Putnam; T Edward Roberts; Michael Stat; Carden C Wallace; Elizabeth Widman; Andrew H Baird
Journal: Sci Data Date: 2016-03-29 Impact factor: 6.444

21 in total

1. Reduced thermal tolerance in a coral carrying CRISPR-induced mutations in the gene for a heat-shock transcription factor.

Authors: Phillip A Cleves; Amanda I Tinoco; Jacob Bradford; Dimitri Perrin; Line K Bay; John R Pringle
Journal: Proc Natl Acad Sci U S A Date: 2020-11-09 Impact factor: 11.205

2. Evolutionary responses of a reef-building coral to climate change at the end of the last glacial maximum.

Authors: Jia Zhang; Zoe T Richards; Arne A S Adam; Cheong Xin Chan; Chuya Shinzato; James Gilmour; Luke Thomas; Jan M Strugnell; David J Miller; Ira Cooke
Journal: Mol Biol Evol Date: 2022-10-11 Impact factor: 8.800

Review 3. Looking Down on NF-κB.

Authors: Leah M Williams; Thomas D Gilmore
Journal: Mol Cell Biol Date: 2020-07-14 Impact factor: 4.272

4. Initial Virome Characterization of the Common Cnidarian Lab Model Nematostella vectensis.

Authors: Magda Lewandowska; Yael Hazan; Yehu Moran
Journal: Viruses Date: 2020-02-15 Impact factor: 5.048

Review 5. Rho Family of Ras-Like GTPases in Early-Branching Animals.

Authors: Silvestar Beljan; Maja Herak Bosnar; Helena Ćetković
Journal: Cells Date: 2020-10-13 Impact factor: 6.600

Review 6. A Review of Toxins from Cnidaria.

Authors: Isabella D'Ambra; Chiara Lauritano
Journal: Mar Drugs Date: 2020-10-06 Impact factor: 5.118