Repurposing drugs to target nonalcoholic steatohepatitis.

Nonalcoholic fatty liver disease (NAFLD) is a complex disorder that has evolved in recent years as the leading global cause of chronic liver damage. The main obstacle to better disease management pertains to the lack of approved pharmacological interventions for the treatment of nonalcoholic steatohepatitis (NASH) and NASH-fibrosis-the severe histological forms. Over the past decade, tremendous advances have been made in NAFLD research, resulting in the discovery of disease mechanisms and novel therapeutic targets. Hence, a large number of pharmacological agents are currently being tested for safety and efficacy. These drugs are in the initial pharmacological phases (phase 1 and 2), which involve testing tolerability, therapeutic action, and pharmacological issues. It is thus reasonable to assume that the next generation of NASH drugs will not be available for clinical use for foreseeable future. The expected delay can be mitigated by drug repurposing or repositioning, which essentially relies on identifying and developing new uses for existing drugs. Here, we propose a drug candidate selection method based on the integration of molecular pathways of disease pathogenesis into network analysis tools that use OMICs data as well as multiples sources, including text mining from the medical literature.

Core tip: As a proof-of-concept of the advantages that can be yielded by applying multi-omics systems-based approaches to the analysis of potential candidates to the treatment of nonalcoholic steatohepatitis (NASH) we selected the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway map of nonalcoholic fatty liver disease (NAFLD), which illustrates a stage-dependent progression of the disease. After generating a protein−chemical interaction network, we predicted remarkable examples of potential drug repurposing for the treatment of NASH based on the NAFLD-KEGG connectivity map.

INTRODUCTION

Nonalcoholic fatty liver disease (NAFLD) is a complex disorder that has emerged as the leading global cause of chronic liver damage in recent years[1]. The disease course progresses through highly dynamic histological stages, ranging from simple steatosis or nonalcoholic fatty liver (NAFL) to nonalcoholic steatohepatitis (NASH), NASH-fibrosis and cirrhosis[1,2]. NASH-fibrosis and its complications, including cirrhosis and hepatocellular carcinoma, not only significantly reduce life expectancy by increasing liver-related mortality[3] but also represent a challenge for the healthcare system because much of the affected population is also affected by NAFLD-associated comorbidities, including obesity, type 2 diabetes (T2D), and cardiovascular disease[1,4-6]. Absence of reliable noninvasive biomarkers that allow identification of patients at a high risk of fibrosis and /or disease progression is one of the obstacles facing disease management[7,8]. Similarly, while a large number of drugs against NASH are currently being tested for efficacy and safety, no pharmacological interventions are presently approved for treating NASH[2,5,9,10].

Information retrieved from public domain data sources and clinical ClinicalTrials.gov (updated December 2018), a resource provided by the U.S. National Library of Medicine, indicates that approximately 47 different drugs that target NASH and NASH-fibrosis are currently being tested in different pharmacological stages, including 188 drugs in phase 1 and 162 in phase 2 studies (Figure 1). A significant proportion of these drugs are small molecules or proteins that either antagonize or act as exogenous agonists of one or more targets of interest; the 47 aforementioned NASH drugs are in fact predicted to be linked to 151 molecular targets (Figure 1). Considering that a large majority of these drugs are in the earliest pharmacological phases that involve testing tolerability, therapeutic action, and pharmacological issues, it is reasonable to conclude that there will be a significant time lag before the next generation of NASH drugs is available for clinical use.

Figure 1

Clinical trials for the treatment of nonalcoholic steatohepatitis. A and B: Figure highlights 47 drugs that are currently under investigation for the treatment of nonalcoholic steatohepatitis in different pharmacological phases (from phase 1 to phase 4): Information on clinical trial status (recruitment status) as well as prediction of potential associated targets were retrieved from the Target Validation Platform available at https://www.targetvalidation.org; C: Drugs listed in the most advanced pharmacological phase updated December 2018 concerning to privately and publicly funded clinical studies. Not yet recruiting: The study has not started recruiting participants; Recruiting: The study is currently recruiting participants; Active, not recruiting: The study is ongoing, and participants are receiving an intervention or being examined, but potential participants are not currently being recruited or enrolled; Terminated: The study has stopped early and will not start again; participants are no longer being examined or treated; Completed: The study has ended normally, and participants are no longer being examined or treated (that is, the last participant's last visit has occurred); Withdrawn: The study stopped early, before enrolling its first participant; Unknown: A study on ClinicalTrials.gov whose last known status was recruiting; not yet recruiting; or active, not recruiting but that has passed its completion date, and the status has not been last verified within the past 2 years).

One potential solution to this expected delay is drug repurposing or repositioning, which relies on identifying and developing new uses for existing drugs[11]. The advantage of drug repurposing is not limited to the fact that drugs selected for a novel indication have already passed the time-consuming pharmacokinetics, pharmacodynamics, and toxicity profiling evaluation, but are also already approved by major regulatory agencies, including the United States Food and Drug Administration and/or the European Medicines Agency.

Drug repurposing can be addressed by different approaches. Most common ones involve the selection of drug candidate/s based on known targets involved in the pathogenesis of the disease of interest. More recently, system biology strategies based on a broad search into genomic resources, as well as large-scale gene expression libraries, have been proposed as an attractive and innovative solution, particularly for the treatment of complex diseases like NAFLD that shares disease mechanisms with diseases of the metabolic syndrome[12-14]. Hence, we propose a drug candidate selection method based on the integration of molecular pathways of disease pathogenesis into network analysis tools that use OMICs data as well as multiples sources, including text mining from pertinent medical literature.

including text mining from pertinent medical literature

including text mining from pertinent medical literature

DRUG REPURPOSING FOR THE TREATMENT OF NASH BASED ON THE NAFLD-KEGG CONNECTIVITY MAP

As a proof-of-concept of the advantages of using multi-omics systems-based approaches for the analysis of potential NASH treatment candidates, we selected the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway map of NAFLD (pathway ID: hsa04932), which illustrates a stage-dependent progression of the disease (Figure 2). This pathway is composed of 149 genes/proteins involved not only in the progression of NAFL to NASH and to cirrhosis, but also genes/proteins shared with obesity and T2D (Table 1). Significant disease-related pathogenic processes, including de novo fatty acid biosynthesis, lipid peroxidation, endoplasmic reticulum stress and mitochondrial dysfunction[15-17], as well as apoptosis and cell death related mechanisms are represented in the NAFLD-KEGG pathway (Figure 2). Thus, we generated a protein−chemical interaction network by mapping the significant genes/proteins that are represented in the pathway to chemicals/drugs that are annotated in the Comparative Toxicogenomics Database. The 149 genes (seeds) yielded by our analysis were then mapped to the corresponding molecular interaction database; this procedure produced an extensive network comprising of approximately 2000 nodes. One of the largest subnetworks included 3212 smaller nodes (that represent the number of gene/protein–chemical interactions in this subnetwork), with 13314 interactions among node members. For simplicity, we manually curated some chemical−drug interactions focusing specifically on certain genes/proteins of potential interest, including members of the caspase family (CASP3 and CASP7), interleukins (IL1A, IL1B, and IL6), tumor necrosis factor α (TNFα), nuclear factor kappa B subunit 1 (NFKB1) and inhibitor of nuclear factor kappa B kinase subunit beta, Jun proto-oncogene (JUN), transcription factor subunit, and AKT serine/threonine kinase 1 (Figure 3). Remarkably, several drugs were predicted to have a significant interaction with the highlighted targets. For example, minocycline that is a broad spectrum long-acting derivative of the antibiotic tetracycline was mapped in the pathway of caspases, whereas IL1B (Figure 3) or pomalidomide that is a derivative of thalidomide with immuno-modulating, antiangiogenic and antineoplastic activities was mapped in the network of TNF, NFKB1, and interleukins (Figure 3).

Figure 2

Nonalcoholic fatty liver disease-Kyoto Encyclopedia of Genes and Genomes pathway and mechanisms of disease pathogenesis. Pathway was retrieved from https://www.genome.jp/dbget-bin/www_bget?pathway+hsa04932; figure was modified to highlight key molecular processes. This map shows a stage-dependent progression of nonalcoholic fatty liver disease (NAFLD). In the first stage of NAFLD, pathway highlights excess lipid accumulation associated with the induction of insulin resistance, which leads to a defect in insulin suppression of free fatty acids (FAAs) disposal. In addition, two transcription factors, SREBP-1c and PPARα, activate key enzymes of lipogenesis and increase the synthesis of FAAs in liver. In the second stage, pathway is presented as a consequence of the progression to nonalcoholic steatohepatitis (NASH); the production of reactive oxygen species is enhanced due to oxidation stress through mitochondrial beta-oxidation of fatty acids and endoplasmic reticulum (ER) stress, leading to lipid peroxidation. The lipid peroxidation can further cause the production of cytokines [Fas ligand, tumor necrosis factor α (TNF-α), IL-8 and transforming growth factor], promoting cell death, inflammation and fibrosis. The activation of JNK, which is induced by ER stress, TNF-α and FAAs, is also associated with NAFLD progression. Increased JNK promotes cytokine production and initiation of hepatocellular carcinoma. Major organelles involved in the pathogenesis of NASH are also highlighted in the NAFLD-pathway, including mitochondria and mitochondrial dysfunction. In the figure, molecular targets that were further selected to explore protein-chemical interactions are highlighted by red squares. NAFLD: Nonalcoholic fatty liver disease; NASH: Nonalcoholic steatohepatitis; ER: Endoplasmic reticulum; HCC: Hepatocellular carcinoma; NAFL: Nonalcoholic fatty liver; FAAs: Free fatty acids; TNFα: tumor necrosis factor α.

Table 1

Non-alcoholic fatty liver disease-Kyoto Encyclopedia of Genes and Genomes pathway (hsa04932)

Gene symbol; description
IL6; interleukin 6
IL6R; interleukin 6 receptor
SOCS3; suppressor of cytokine signaling 3
TNF; tumor necrosis factor
TNFRSF1A; TNF receptor superfamily member 1A
NFKB1; nuclear factor kappa B subunit 1
RELA; RELA proto-oncogene, NF-kB subunit
INS; insulin
INSR; insulin receptor
IRS1; insulin receptor substrate 1
IRS2; insulin receptor substrate 2
PIK3CA; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
PIK3CD; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta
PIK3CB; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta
PIK3R1; phosphoinositide-3-kinase regulatory subunit 1
PIK3R2; phosphoinositide-3-kinase regulatory subunit 2
PIK3R3; phosphoinositide-3-kinase regulatory subunit 3
AKT1; AKT serine/threonine kinase 1
AKT2; AKT serine/threonine kinase 2
AKT3; AKT serine/threonine kinase 3
GSK3A; glycogen synthase kinase 3 alpha
GSK3B; glycogen synthase kinase 3 beta
NR1H3; nuclear receptor subfamily 1 group H member 3
RXRA; retinoid X receptor alpha
SREBF1; sterol regulatory element binding transcription factor 1
MLX; MLX, MAX dimerization protein
MLXIP; MLX interacting protein
MLXIPL; MLX interacting protein like
PKLR; pyruvate kinase L/R
LEP; leptin
LEPR; leptin receptor
ADIPOQ; adiponectin, C1Q and collagen domain containing
ADIPOR1; adiponectin receptor 1
ADIPOR2; adiponectin receptor 2
PRKAA1; protein kinase AMP-activated catalytic subunit alpha 1
PRKAA2; protein kinase AMP-activated catalytic subunit alpha 2
PRKAB1; protein kinase AMP-activated non-catalytic subunit beta 1
PRKAB2; protein kinase AMP-activated non-catalytic subunit beta 2
PRKAG1; protein kinase AMP-activated non-catalytic subunit gamma 1
PRKAG3; protein kinase AMP-activated non-catalytic subunit gamma 3
PRKAG2; protein kinase AMP-activated non-catalytic subunit gamma 2
PPARA; peroxisome proliferator activated receptor alpha
CDC42; cell division cycle 42
RAC1; Rac family small GTPase 1
MAP3K11; mitogen-activated protein kinase kinase kinase 11
MAPK8; mitogen-activated protein kinase 8
MAPK10; mitogen-activated protein kinase 10
MAPK9; mitogen-activated protein kinase 9
ITCH; itchy E3 ubiquitin protein ligase
ERN1; endoplasmic reticulum to nucleus signaling 1
TRAF2; TNF receptor associated factor 2
MAP3K5; mitogen-activated protein kinase kinase kinase 5
JUN; Jun proto-oncogene, AP-1 transcription factor subunit
IL1A; interleukin 1 alpha
IL1B; interleukin 1 beta
IKBKB; inhibitor of nuclear factor kappa B kinase subunit beta
XBP1; X-box binding protein 1
CEBPA; CCAAT enhancer binding protein alpha
CYP2E1; cytochrome P450 family 2 subfamily E member 1
FASLG; Fas ligand
CXCL8; C-X-C motif chemokine ligand 8
TGFB1; transforming growth factor beta 1
EIF2AK3; eukaryotic translation initiation factor 2 alpha kinase 3
EIF2S1; eukaryotic translation initiation factor 2 subunit alpha
ATF4; activating transcription factor 4
DDIT3; DNA damage inducible transcript 3
BCL2L11; BCL2 like 11
BAX; BCL2 associated X, apoptosis regulator
FAS; Fas cell surface death receptor
CASP8; caspase 8
BID; BH3 interacting domain death agonist
CYCS; cytochrome c, somatic
CASP3; caspase 3
CASP7; caspase 7
NDUFV1-3; NADH:ubiquinone oxidoreductase core subunit V1 –V3
NDUFA1-3; NADH:ubiquinone oxidoreductase subunit A1-3
NDUFA4; NDUFA4, mitochondrial complex associated
NDUFA4L2; NDUFA4, mitochondrial complex associated like 2
NDUFA5-13; NADH:ubiquinone oxidoreductase subunit A5-A13
NDUFAB1; NADH:ubiquinone oxidoreductase subunit AB1
NDUFB1-11; NADH:ubiquinone oxidoreductase subunit B1-B11
NDUFS1-S8; NADH:ubiquinone oxidoreductase core subunit S1 –S8
NDUFC1; NADH:ubiquinone oxidoreductase subunit C1
NDUFC2; NADH:ubiquinone oxidoreductase subunit C2
NDUFC2-KCTD14; NDUFC2-KCTD14 readthrough
SDHA; succinate dehydrogenase complex flavoprotein subunit A
SDHB; succinate dehydrogenase complex iron sulfur subunit B
SDHC; succinate dehydrogenase complex subunit C
SDHD; succinate dehydrogenase complex subunit D
UQCRFS1; ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1
CYTB; cytochrome b
CYC1; cytochrome c1
UQCRC1; ubiquinol-cytochrome c reductase core protein 1
UQCRC2; ubiquinol-cytochrome c reductase core protein 2
UQCRH; ubiquinol-cytochrome c reductase hinge protein
UQCRHL; ubiquinol-cytochrome c reductase hinge protein like
UQCRB; ubiquinol-cytochrome c reductase binding protein
UQCRQ; ubiquinol-cytochrome c reductase complex III subunit VII
UQCR10; ubiquinol-cytochrome c reductase, complex III subunit X
UQCR11; ubiquinol-cytochrome c reductase, complex III subunit XI
COX3; cytochrome c oxidase III
COX1; cytochrome c oxidase subunit I
COX2; cytochrome c oxidase subunit II
COX4I2; cytochrome c oxidase subunit 4I2
COX4I1; cytochrome c oxidase subunit 4I1
COX5A; cytochrome c oxidase subunit 5A
COX5B; cytochrome c oxidase subunit 5B
COX6A1; cytochrome c oxidase subunit 6A1
COX6A2; cytochrome c oxidase subunit 6A2
COX6B1; cytochrome c oxidase subunit 6B1
COX6B2; cytochrome c oxidase subunit 6B2
COX6C; cytochrome c oxidase subunit 6C
COX7A1; cytochrome c oxidase subunit 7A1
COX7A2; cytochrome c oxidase subunit 7A2
COX7A2L; cytochrome c oxidase subunit 7A2 like
COX7B; cytochrome c oxidase subunit 7B
COX7B2; cytochrome c oxidase subunit 7B2
COX7C; cytochrome c oxidase subunit 7C
COX8C; cytochrome c oxidase subunit 8C
COX8A; cytochrome c oxidase subunit 8A

https://www.genome.jp/kegg-bin/show_pathway? hsa04932.

Figure 3

Protein-chemical interactions and potential repurposing drugs to target nonalcoholic steatohepatitis. We generated a protein-chemical interaction network by mapping the significant genes/proteins that are represented in the nonalcoholic fatty liver disease-Kyoto Encyclopedia of Genes and Genomes pathway to chemicals/drugs that are annotated in the Comparative Toxicogenomics Database. The 149 genes (seeds) from our analysis were mapped to the corresponding molecular interaction database; full list of seed genes is listed in Table 1. This analysis generated a huge network composed of approximately 2000 nodes. Current figure shows chemical-drug-interactions specifically focused on selected genes/proteins of potential interest, including members of the caspase family (CASP3 and CASP7), interleukins (IL1B, IL1A, and IL6), tumor necrosis factor α (TNF-α), NFKB1 (Nuclear factor kappa B subunit 1) and IKBKB (inhibitor of nuclear factor kappa B kinase subunit beta), JUN (Jun proto-oncogene, AP-1 transcription factor subunit), AKT1 (AKT serine/threonine kinase 1). In green charts we summarized information on current use and known action of selected drugs. Interaction network was predicted by the Networkanalyst resource available at https://www.networkanalyst.ca/faces/home.xhtml. The network is shown as a Cytoscape graph.

Additional targets predicted in the minoclycline interaction network are arachidonate 5-lipoxygenase (which is involved in the synthesis of leukotrienes from arachidonic acid), cytochrome C (a central component of the electron transport chain in mitochondria), matrix metallopeptidase 9 (involved in the breakdown of extracellular matrix), vascular endothelial growth factor A (which induces proliferation and migration of vascular endothelial cells, particularly during pathological angiogenesis) and Poly(ADP-ribose) polymerase 1 (which is involved in the regulation of a myriad of cellular processes, such as differentiation, proliferation, and tumor transformation, as well as in the regulation of the molecular events implicit in the cell recovery from DNA damage). Further two candidate targets predicted in the network of pomalidomide are prostaglandin-endoperoxide synthase 2 (also known as cyclooxygenase, which is the key enzyme in prostaglandin biosynthesis) and CRBN (a calcium channel membrane protein, thought to play a role in brain development).

Additional examples of drugs that could be potentially tested for the treatment of NASH based on the concept of drug repositioning are illustrated in Figure 3. Drugs in the category of angiotensin II receptor type 1 (AGTR1) antagonists that were predicted in the network of JUN, for instance irbersartan-a nonpeptide AGTR1 antagonist with antihypertensive activity-might indeed be regarded as an indication expansion rather than drug repositioning because, as mentioned above, NAFLD and components of the Metabolic Syndrome, including arterial hypertension, present shared disease mechanisms (12-14). Therefore, given the pleiotropic effects of AGTR1 blockers[18] it is plausible to suggest that drugs in this pharmacological group-sartans-would synergize or potentiate the benefits of blocking the renin angiotensin system in the liver[19-22]. Remarkably, the pharmacological properties and toxicity profiles of some of the drugs presently undergoing NASH clinical trials are already known, such as atorvastatin, ezetimibe, fenofribrate, losartan, and pioglotazone, just to mention a few (Figure 1).

PLEIOTROPY: CHALLENGES AND OPPORTUNITIES FOR THE TREATMENT OF NASH

It is also important to acknowledge the possibility that some of the novel pharmacotherapy options for the treatment of NASH might eventually present pleiotropic effect/s. This point represents the paradox of a drug covering multiple pathways and cell types, which could be either harmful or beneficial for patients. Remarkable examples of the advantages of pleiotropic effects of pharmacological targets for the treatment of complex traits are, as already mentioned, agents that modulate or interfere with the rennin−angiotensin system, which not only reduce cardiovascular risk but also improve systemic inflammation, oxidative stress, and even present anti-fibrogenic properties in the liver. Similar effects have also been demonstrated for statins[23,24].

When focusing on the new generation of NASH targets, obeticholic acid (OCA), a synthetically-modified bile acid (a dihydroxy-5beta-cholanic acid), is a remarkable example of the potential systemic effects of a drug targeting nuclear receptors. OCA exhibits a potent agonist effect on the farnesoid X nuclear receptor (FXR). More importantly, its target-FXR (formally Nuclear hormone receptor subfamily 1 group H member 4, NR1H4, also known as BAR) is predicted to be involved in the pathogenesis of multiple phenotypes that practically cover the full range of human diseases and traits (Figure 4). It is well known that OCA is currently used to treat not only NASH but other chronic liver diseases as well, including primary biliary cholangitis[25]. However, there are at least 65 registered clinical trials in various pharmacological phases for ~50 different diseases (Figure 4).

Figure 4

Farnesoid X nuclear receptor (nuclear hormone receptor subfamily 1 group H member 4): Analysis of pleiotropy. A: Graph shows all predicted diseases associated with farnesoid X nuclear receptor; B: Clinical trials of drugs that target farnesoid X nuclear receptor. Predictions were explored in The Open Targets Platform that allows prioritisation of drug targets based on the strength of their association with a disease (https://www.targetvalidation.org/); C: Evidence curated from ClinicalTrials.gov, a database of privately and publicly funded clinical studies conducted around the world. https://clinicaltrials.gov/. Diseases are presented as bubbles grouped into therapeutic areas using their Experimental Factor Ontology relationships. The size and shade of the color of each bubble is proportional to the strength of association between the disease and farnesoid X nuclear receptor. The concept of a target-disease association is based on the analysis of several resources, including genetic associations (GWAS Catalog, UniProt, European Variation Archive, Gene2Phenotype), somatic mutations (Cancer Gene Census, European Variation Archive somatic, IntOGen), RNA expression (expression atlas), drugs (ChEMBL), affected pathways (Reactome), animal models (PhenoDigm) and text mining (Europe PMC). The platform is available at https://www.targetvalidation.org. Data last updated December 2018.

Based on this evidence, one may presume that the pleiotropic effects, and thus the clinical consequences, of the novel NASH drugs that are predicted to concurrently modulate a broad range of molecular pathways could be surprisingly extensive and therefore largely beneficial for treating multiple phenotypes. However, potential pleiotropic effects of the novel anti-NASH drugs could produce undesirable effects that we need to understand in order to anticipate their management. Some of these potential pleiotropic effects are indeed related to the primary biological and molecular network associated with the drug target itself. To illustrate the importance of this issue, we randomly selected five molecular targets (MAP3K5 or ASK1, FXR, PPARα/δ, THRβ, and MPC1) against which five drugs are currently being tested in patients with NASH (selonsertib[26], OCA[27], elafibranor[28], MGL-3196 (https://clinicaltrials.gov/ct2/show/NCT02912260), and MSDC-0602K[29] https://clinicaltrials.gov/ct2/show/NCT02784444). Next, we explored the potential pleiotropic effect/s of modulating these targets in humans by searching for associations of genetic variants in the aforementioned targets with different phenotypes and traits, known as PheWAS (Phenome-wide association studies). We specifically retrieved publically available information from the United Kindom Biobank that explored genetic variations in 452264 United Kindom Biobank White British individuals (http://geneatlas.roslin.ed.ac.uk/)[30].

As shown in Figure 5 and Table 2, MAP3K5/ASK1, FXR, PPARα/δ, THRβ, and MPC1 variants are involved in multiple pleiotropic effects, including modulation of blood cell count, body mass index, and general body adiposity, along with complex systemic disorders, such as asthma, acute pancreatitis, migraine, intestinal malabsortium, thyroid disease, and malignant neoplasm. Hence, understanding the pleiotropic effects of the novel NASH drugs is the key to optimizing their use as well as preventing emergent-yet poorly understood-undesirable systemic complications that could potentially jeopardize their short- or long-term use.

Figure 5

The complexity of molecular targets and novel nonalcoholic steatohepatitis drugs: Pleiotropy assessed in the PheWAS United Kindom Biobank. Figure shows associations between gene variants in five nonalcoholic steatohepatitis-related molecular targets (MAP3K5/ASK1, FXR, PPARα/δ, THRβ, and MPC1) with different traits and phenotypes in the UK-PheWAS (Phenome-wide association study). Information regarding single nucleotide polymorphisms and associations were retrieved from the United Kindom Biobank (http://geneatlas.roslin.ed.ac.uk/).

Table 2

Associations between variants in locus that are targets of novel drugs for the treatment of nonalcoholic steatohepatitis and multiple traits from individuals of the United Kindom Biobank

Trait	Variant	Position	-log10(p-value)
NR1H4 (FXR) Farnesoid X-Activated Receptor
K85 Acute pancreatitis	rs76372051	100945711	6.963890333
Immature reticulocyte fraction	rs35712	100971355	5.607954097
Impedance of arm (right)	rs1409791	100851307	5.152661824
Impedance of whole body	rs1409791	100851307	4.772216099
migraine	rs12579460	100966714	4.639293011
high cholesterol	rs7967468	100853792	4.543497322
N30-N39 Other diseases of urinary system	rs79306023	100938470	4.420628035
H81 Disorders of vestibular function	rs140644635	100923359	4.069764347
PPARδ (Peroxisome Proliferator Activated Receptor Delta)
Whole body fat-free mass	rs36018387	35386872	59.74853212
Hip circumference	rs36018387	35386872	49.20670564
Whole body fat mass	rs36018387	35386872	37.00113934
Body fat percentage	rs36018387	35386872	20.45328464
Monocyte percentage	rs9469982	35267548	45.86340625
Platelet crit	rs33959228	35259397	21.6726615
White blood cell (leukocyte) count	rs9380500	35266231	21.54556677
Platelet count	rs9658111	35364534	17.88276186
Neutrophill count	rs9380500	35266231	17.11253462
Eosinophill percentage	rs2395625	35405461	15.34904201
Lymphocyte percentage	rs9658079	35327577	9.741626151
asthma	rs1557568	35260530	9.184130164
K90 Intestinal malabsorption	rs7771474	35320447	11.86097145
MPC1 (Mitochondrial Pyruvate Carrier 1)
Mean platelet (thrombocyte) volume	rs10946160	166757818	7.378512135
Platelet count	rs3728	166778679	5.285527735
Red blood cell (erythrocyte) count	rs6916128	166759313	4.825911105
M31 Other necrotising vasculopathies	rs7449594	166774429	4.699926505
dyspepsia / indigestion	rs6909951	166758198	4.594790286
MAP3K5 (ASK-1) (Mitogen-Activated Protein Kinase Kinase Kinase 5)
Mean platelet (thrombocyte) volume	rs6924387	137082948	14.48853109
Eosinophill count	rs932589	137083138	13.39556873
Lymphocyte percentage	rs6924387	137082948	10.84396601
Neutrophill count	rs6924387	137082948	10.59715422
Platelet count	rs9321570	137095679	9.792150289
White blood cell (leukocyte) count	rs6924387	137082948	9.574319083
Eosinophill percentage	rs932589	137083138	9.344890391
Monocyte count	rs9385775	137144920	9.1157769
Mean reticulocyte volume	rs9385775	137144920	8.817927896
Platelet distribution width	rs6924387	137082948	8.001963098
THRβ (Thyroid Hormone Receptor Beta)
Mean corpuscular volume	rs869785	24347800	152.2743497
Mean corpuscular haemoglobin	rs869784	24348008	143.9371173
Red blood cell (erythrocyte) count	rs869785	24347800	61.9076303
Mean reticulocyte volume	rs869784	24348008	43.97976306
Reticulocyte count	rs1505307	24343330	16.57632823
Immature reticulocyte fraction	rs869784	24348008	15.67096843
Monocyte count	rs12485694	24346109	11.11788547
Lymphocyte count	rs13096529	24232035	10.58643203
Red blood cell (erythrocyte) distribution width	rs2167115	24339734	10.44361306
C56 Malignant neoplasm of ovary	rs189397255	24389732	12.2277003
Trunk fat-free mass	rs13100197	24491484	8.731024419
Trunk predicted mass	rs13100197	24491484	8.614769205
Leg fat percentage (left)	rs1349265	24159387	8.323233252

The associations have been computed using 452264 United Kindom Biobank White British individuals. http://geneatlas.roslin.ed.ac.uk/.

CONCLUSION

We provide new strategies and approaches by which known drugs can be repurposed for the treatment of NASH. Although we explored and mapped NAFLD-chemical interaction networks, it will be necessary to perform clinical trials not only to assess therapeutic response and optimize dosage and delivery routes, but also to explore the possibility that new uses of existing (old) drugs could act on novel or unanticipated targets. The presence of potential “off target”-pleiotropic-effects raises the mandatory necessity of pharmacological optimization, including the assessment of drug interactions and adjustment according to liver function tests.