Literature DB >> 31056281

Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series.

Antoine Fages1, Kristian Hanghøj1, Naveed Khan2, Charleen Gaunitz3, Andaine Seguin-Orlando1, Michela Leonardi4, Christian McCrory Constantz5, Cristina Gamba3, Khaled A S Al-Rasheid6, Silvia Albizuri7, Ahmed H Alfarhan6, Morten Allentoft3, Saleh Alquraishi6, David Anthony8, Nurbol Baimukhanov9, James H Barrett10, Jamsranjav Bayarsaikhan11, Norbert Benecke12, Eloísa Bernáldez-Sánchez13, Luis Berrocal-Rangel14, Fereidoun Biglari15, Sanne Boessenkool16, Bazartseren Boldgiv17, Gottfried Brem18, Dorcas Brown8, Joachim Burger19, Eric Crubézy20, Linas Daugnora21, Hossein Davoudi22, Peter de Barros Damgaard3, María de Los Ángeles de Chorro Y de Villa-Ceballos23, Sabine Deschler-Erb24, Cleia Detry25, Nadine Dill24, Maria do Mar Oom26, Anna Dohr27, Sturla Ellingvåg28, Diimaajav Erdenebaatar29, Homa Fathi30, Sabine Felkel18, Carlos Fernández-Rodríguez31, Esteban García-Viñas32, Mietje Germonpré33, José D Granado24, Jón H Hallsson34, Helmut Hemmer19, Michael Hofreiter35, Aleksei Kasparov36, Mutalib Khasanov37, Roya Khazaeli30, Pavel Kosintsev38, Kristian Kristiansen39, Tabaldiev Kubatbek40, Lukas Kuderna41, Pavel Kuznetsov42, Haeedeh Laleh43, Jennifer A Leonard44, Johanna Lhuillier45, Corina Liesau von Lettow-Vorbeck14, Andrey Logvin46, Lembi Lõugas47, Arne Ludwig48, Cristina Luis49, Ana Margarida Arruda25, Tomas Marques-Bonet50, Raquel Matoso Silva51, Victor Merz52, Enkhbayar Mijiddorj29, Bryan K Miller53, Oleg Monchalov42, Fatemeh A Mohaseb54, Arturo Morales55, Ariadna Nieto-Espinet56, Heidi Nistelberger16, Vedat Onar57, Albína H Pálsdóttir58, Vladimir Pitulko36, Konstantin Pitskhelauri59, Mélanie Pruvost60, Petra Rajic Sikanjic61, Anita Rapan Papeša62, Natalia Roslyakova42, Alireza Sardari63, Eberhard Sauer64, Renate Schafberg65, Amelie Scheu19, Jörg Schibler24, Angela Schlumbaum24, Nathalie Serrand66, Aitor Serres-Armero41, Beth Shapiro67, Shiva Sheikhi Seno54, Irina Shevnina46, Sonia Shidrang68, John Southon69, Bastiaan Star16, Naomi Sykes70, Kamal Taheri71, William Taylor72, Wolf-Rüdiger Teegen73, Tajana Trbojević Vukičević74, Simon Trixl75, Dashzeveg Tumen76, Sainbileg Undrakhbold17, Emma Usmanova77, Ali Vahdati63, Silvia Valenzuela-Lamas78, Catarina Viegas25, Barbara Wallner18, Jaco Weinstock79, Victor Zaibert80, Benoit Clavel81, Sébastien Lepetz81, Marjan Mashkour54, Agnar Helgason82, Kári Stefánsson82, Eric Barrey83, Eske Willerslev3, Alan K Outram84, Pablo Librado1, Ludovic Orlando85.   

Abstract

Horse domestication revolutionized warfare and accelerated travel, trade, and the geographic expansion of languages. Here, we present the largest DNA time series for a non-human organism to date, including genome-scale data from 149 ancient animals and 129 ancient genomes (≥1-fold coverage), 87 of which are new. This extensive dataset allows us to assess the modern legacy of past equestrian civilizations. We find that two extinct horse lineages existed during early domestication, one at the far western (Iberia) and the other at the far eastern range (Siberia) of Eurasia. None of these contributed significantly to modern diversity. We show that the influence of Persian-related horse lineages increased following the Islamic conquests in Europe and Asia. Multiple alleles associated with elite-racing, including at the MSTN "speed gene," only rose in popularity within the last millennium. Finally, the development of modern breeding impacted genetic diversity more dramatically than the previous millennia of human management.
Copyright © 2019 The Author(s). Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  ancient DNA; animal breeding; diversity; domestication; equestrian civilizations; extinct lineages; horses; management; mules; selection

Mesh:

Substances:

Year:  2019        PMID: 31056281      PMCID: PMC6547883          DOI: 10.1016/j.cell.2019.03.049

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   66.850


  61 in total

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7.  Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments.

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Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-23       Impact factor: 11.205

8.  Prehistoric genomes reveal the genetic foundation and cost of horse domestication.

Authors:  Mikkel Schubert; Hákon Jónsson; Dan Chang; Clio Der Sarkissian; Luca Ermini; Aurélien Ginolhac; Anders Albrechtsen; Isabelle Dupanloup; Adrien Foucal; Bent Petersen; Matteo Fumagalli; Maanasa Raghavan; Andaine Seguin-Orlando; Thorfinn S Korneliussen; Amhed M V Velazquez; Jesper Stenderup; Cindi A Hoover; Carl-Johan Rubin; Ahmed H Alfarhan; Saleh A Alquraishi; Khaled A S Al-Rasheid; David E MacHugh; Ted Kalbfleisch; James N MacLeod; Edward M Rubin; Thomas Sicheritz-Ponten; Leif Andersson; Michael Hofreiter; Tomas Marques-Bonet; M Thomas P Gilbert; Rasmus Nielsen; Laurent Excoffier; Eske Willerslev; Beth Shapiro; Ludovic Orlando
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9.  European domestic horses originated in two holocene refugia.

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10.  The genome of a Late Pleistocene human from a Clovis burial site in western Montana.

Authors:  Morten Rasmussen; Sarah L Anzick; Michael R Waters; Pontus Skoglund; Michael DeGiorgio; Thomas W Stafford; Simon Rasmussen; Ida Moltke; Anders Albrechtsen; Shane M Doyle; G David Poznik; Valborg Gudmundsdottir; Rachita Yadav; Anna-Sapfo Malaspinas; Samuel Stockton White; Morten E Allentoft; Omar E Cornejo; Kristiina Tambets; Anders Eriksson; Peter D Heintzman; Monika Karmin; Thorfinn Sand Korneliussen; David J Meltzer; Tracey L Pierre; Jesper Stenderup; Lauri Saag; Vera M Warmuth; Margarida C Lopes; Ripan S Malhi; Søren Brunak; Thomas Sicheritz-Ponten; Ian Barnes; Matthew Collins; Ludovic Orlando; Francois Balloux; Andrea Manica; Ramneek Gupta; Mait Metspalu; Carlos D Bustamante; Mattias Jakobsson; Rasmus Nielsen; Eske Willerslev
Journal:  Nature       Date:  2014-02-13       Impact factor: 49.962

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  48 in total

1.  Ancient genomes reveal early Andean farmers selected common beans while preserving diversity.

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Review 2.  Beyond broad strokes: sociocultural insights from the study of ancient genomes.

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4.  A Dynamic 6,000-Year Genetic History of Eurasia's Eastern Steppe.

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7.  Performance and automation of ancient DNA capture with RNA hyRAD probes.

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Review 8.  Animal domestication in the era of ancient genomics.

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9.  Origins and genetic legacy of prehistoric dogs.

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10.  Large-scale genomic analysis reveals the genetic cost of chicken domestication.

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Journal:  BMC Biol       Date:  2021-06-16       Impact factor: 7.431

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