Literature DB >> 31048766

Cellular functions of long noncoding RNAs.

Run-Wen Yao1, Yang Wang1, Ling-Ling Chen2,3.   

Abstract

A diverse catalog of long noncoding RNAs (lncRNAs), which lack protein-coding potential, are transcribed from the mammalian genome. They are emerging as important regulators in gene expression networks by controlling nuclear architecture and transcription in the nucleus and by modulating mRNA stability, translation and post-translational modifications in the cytoplasm. In this Review, we highlight recent progress in cellular functions of lncRNAs at the molecular level in mammalian cells.

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Year:  2019        PMID: 31048766     DOI: 10.1038/s41556-019-0311-8

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.824


  136 in total

1.  3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA.

Authors:  Jeremy E Wilusz; Susan M Freier; David L Spector
Journal:  Cell       Date:  2008-11-28       Impact factor: 41.582

2.  SLERT Regulates DDX21 Rings Associated with Pol I Transcription.

Authors:  Yu-Hang Xing; Run-Wen Yao; Yang Zhang; Chun-Jie Guo; Shan Jiang; Guang Xu; Rui Dong; Li Yang; Ling-Ling Chen
Journal:  Cell       Date:  2017-05-04       Impact factor: 41.582

3.  Unusual Processing Generates SPA LncRNAs that Sequester Multiple RNA Binding Proteins.

Authors:  Huang Wu; Qing-Fei Yin; Zheng Luo; Run-Wen Yao; Chuan-Chuan Zheng; Jun Zhang; Jian-Feng Xiang; Li Yang; Ling-Ling Chen
Journal:  Mol Cell       Date:  2016-10-27       Impact factor: 17.970

4.  Circular RNAs are a large class of animal RNAs with regulatory potency.

Authors:  Sebastian Memczak; Marvin Jens; Antigoni Elefsinioti; Francesca Torti; Janna Krueger; Agnieszka Rybak; Luisa Maier; Sebastian D Mackowiak; Lea H Gregersen; Mathias Munschauer; Alexander Loewer; Ulrike Ziebold; Markus Landthaler; Christine Kocks; Ferdinand le Noble; Nikolaus Rajewsky
Journal:  Nature       Date:  2013-02-27       Impact factor: 49.962

5.  Schematic modelling of peripheral astigmatism in real eyes.

Authors:  M C Dunne; D A Barnes
Journal:  Ophthalmic Physiol Opt       Date:  1987       Impact factor: 3.117

6.  MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles.

Authors:  Hongjae Sunwoo; Marcel E Dinger; Jeremy E Wilusz; Paulo P Amaral; John S Mattick; David L Spector
Journal:  Genome Res       Date:  2008-12-22       Impact factor: 9.043

7.  Circular intronic long noncoding RNAs.

Authors:  Yang Zhang; Xiao-Ou Zhang; Tian Chen; Jian-Feng Xiang; Qing-Fei Yin; Yu-Hang Xing; Shanshan Zhu; Li Yang; Ling-Ling Chen
Journal:  Mol Cell       Date:  2013-09-12       Impact factor: 17.970

8.  Long noncoding RNAs with snoRNA ends.

Authors:  Qing-Fei Yin; Li Yang; Yang Zhang; Jian-Feng Xiang; Yue-Wei Wu; Gordon G Carmichael; Ling-Ling Chen
Journal:  Mol Cell       Date:  2012-09-06       Impact factor: 17.970

9.  The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Authors:  Thomas Derrien; Rory Johnson; Giovanni Bussotti; Andrea Tanzer; Sarah Djebali; Hagen Tilgner; Gregory Guernec; David Martin; Angelika Merkel; David G Knowles; Julien Lagarde; Lavanya Veeravalli; Xiaoan Ruan; Yijun Ruan; Timo Lassmann; Piero Carninci; James B Brown; Leonard Lipovich; Jose M Gonzalez; Mark Thomas; Carrie A Davis; Ramin Shiekhattar; Thomas R Gingeras; Tim J Hubbard; Cedric Notredame; Jennifer Harrow; Roderic Guigó
Journal:  Genome Res       Date:  2012-09       Impact factor: 9.043

10.  Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types.

Authors:  Julia Salzman; Charles Gawad; Peter Lincoln Wang; Norman Lacayo; Patrick O Brown
Journal:  PLoS One       Date:  2012-02-01       Impact factor: 3.240

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  407 in total

1.  New twists on long noncoding RNAs: from mobile elements to motile cancer cells.

Authors:  Tuan M Nguyen; Sumayya Alchalabi; Adewunmi Oluwatoyosi; Ali S Ropri; Jason I Herschkowitz; Jeffrey M Rosen
Journal:  RNA Biol       Date:  2020-06-10       Impact factor: 4.652

2.  Identification of long noncoding RNAs involved in adaptability to chronic hypoxic by whole transcriptome sequencing.

Authors:  Zengrong Zhang; Mohan Qiu; Huarui Du; Qingyun Li; Chunlin Yu; Wu Gan; Han Peng; Bo Xia; Xia Xiong; Xiaoyan Song; Li Yang; Chenming Hu; Jialei Chen; Chaowu Yang; Xiaosong Jiang
Journal:  3 Biotech       Date:  2020-05-27       Impact factor: 2.406

3.  The RNA landscape of the human placenta in health and disease.

Authors:  Gordon C S Smith; D Stephen Charnock-Jones; Sungsam Gong; Francesca Gaccioli; Justyna Dopierala; Ulla Sovio; Emma Cook; Pieter-Jan Volders; Lennart Martens; Paul D W Kirk; Sylvia Richardson
Journal:  Nat Commun       Date:  2021-05-11       Impact factor: 14.919

4.  A host lncRNA regulates the innate immune response to an RNA virus.

Authors:  Kiyoharu Fukushima; Hiroshi Kida
Journal:  Cell Mol Immunol       Date:  2019-08-29       Impact factor: 11.530

5.  Long noncoding RNA MIR4435-2HG enhances metabolic function of myeloid dendritic cells from HIV-1 elite controllers.

Authors:  Ciputra Adijaya Hartana; Yelizaveta Rassadkina; Ce Gao; Enrique Martin-Gayo; Bruce D Walker; Mathias Lichterfeld; Xu G Yu
Journal:  J Clin Invest       Date:  2021-05-03       Impact factor: 14.808

Review 6.  Cross-species RNA-seq for deciphering host-microbe interactions.

Authors:  Alexander J Westermann; Jörg Vogel
Journal:  Nat Rev Genet       Date:  2021-02-17       Impact factor: 53.242

7.  LINC00174 is a novel prognostic factor in thymic epithelial tumors involved in cell migration and lipid metabolism.

Authors:  Claudia Tito; Federica Ganci; Andrea Sacconi; Silvia Masciarelli; Giulia Fontemaggi; Claudio Pulito; Enzo Gallo; Valentina Laquintana; Alessia Iaiza; Luciana De Angelis; Anna Benedetti; Jessica Cacciotti; Selenia Miglietta; Maria Bellenghi; Alessandra Carè; Alessandro Fatica; Daniele Diso; Marco Anile; Vincenzo Petrozza; Francesco Facciolo; Gabriele Alessandrini; Edoardo Pescarmona; Federico Venuta; Mirella Marino; Giovanni Blandino; Francesco Fazi
Journal:  Cell Death Dis       Date:  2020-11-07       Impact factor: 8.469

8.  Experimental Validation of the Noncoding Potential for lncRNAs.

Authors:  Emily A Dangelmaier; Ashish Lal
Journal:  Methods Mol Biol       Date:  2021

Review 9.  Analytical ultracentrifuge: an ideal tool for characterization of non-coding RNAs.

Authors:  Maulik D Badmalia; M Quadir Siddiqui; Tyler Mrozowich; Darren L Gemmill; Trushar R Patel
Journal:  Eur Biophys J       Date:  2020-10-16       Impact factor: 1.733

Review 10.  Long non-coding RNAs in nasopharyngeal carcinoma: biological functions and clinical applications.

Authors:  Yao Tang; Xiusheng He
Journal:  Mol Cell Biochem       Date:  2021-05-17       Impact factor: 3.396

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