Literature DB >> 31042031

Solubility Challenge Revisited after Ten Years, with Multilab Shake-Flask Data, Using Tight (SD ∼ 0.17 log) and Loose (SD ∼ 0.62 log) Test Sets.

Antonio Llinas1, Alex Avdeef2.   

Abstract

Ten years ago we issued, in conjunction with the Journal of Chemical Information and Modeling, an open prediction challenge to the cheminformatics community. Would they be able to predict the intrinsic solubilities of 32 druglike compounds using only a high-precision set of 100 compounds as a training set? The "Solubility Challenge" was a widely recognized success and spurred many discussions about the prediction methods and quality of data. Regardless of the obvious limitations of the challenge, the conclusions were somewhat unexpected. Despite contestants employing the entire spectrum of approaches available then to predict aqueous solubility and disposing of an extremely tight data set, it was not possible to identify the best methods at predicting aqueous solubility, a variety of methods and combinations all performed equally well (or badly). Several authors have suggested since then that it is not the poor quality of the solubility data which limits the accuracy of the predictions, but the deficient methods used. Now, ten years after the original Solubility Challenge, we revisit it and challenge the community to a new test with a much larger database with estimates of interlaboratory reproducibility.

Year:  2019        PMID: 31042031     DOI: 10.1021/acs.jcim.9b00345

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  8 in total

1.  D3R Grand Challenge 4: prospective pose prediction of BACE1 ligands with AutoDock-GPU.

Authors:  Diogo Santos-Martins; Jerome Eberhardt; Giulia Bianco; Leonardo Solis-Vasquez; Francesca Alessandra Ambrosio; Andreas Koch; Stefano Forli
Journal:  J Comput Aided Mol Des       Date:  2019-11-06       Impact factor: 3.686

2.  Machine learning with physicochemical relationships: solubility prediction in organic solvents and water.

Authors:  Samuel Boobier; David R J Hose; A John Blacker; Bao N Nguyen
Journal:  Nat Commun       Date:  2020-11-13       Impact factor: 14.919

3.  Three machine learning models for the 2019 Solubility Challenge.

Authors:  John B O Mitchell
Journal:  ADMET DMPK       Date:  2020-06-15

4.  Prediction of aqueous intrinsic solubility of druglike molecules using Random Forest regression trained with Wiki-pS0 database.

Authors:  Alex Avdeef
Journal:  ADMET DMPK       Date:  2020-03-04

5.  ADME prediction with KNIME: A retrospective contribution to the second "Solubility Challenge".

Authors:  Gabriela Falcón-Cano; Christophe Molina; Miguel Ángel Cabrera-Pérez
Journal:  ADMET DMPK       Date:  2021-07-12

6.  Do you know your r2?

Authors:  Alex Avdeef
Journal:  ADMET DMPK       Date:  2020-08-30

7.  Multi-lab intrinsic solubility measurement reproducibility in CheqSol and shake-flask methods.

Authors:  Alex Avdeef
Journal:  ADMET DMPK       Date:  2019-06-05

8.  ADME prediction with KNIME: In silico aqueous solubility consensus model based on supervised recursive random forest approaches.

Authors:  Gabriela Falcón-Cano; Christophe Molina; Miguel Ángel Cabrera-Pérez
Journal:  ADMET DMPK       Date:  2020-08-07
  8 in total

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