Literature DB >> 31035857

Spring is in the air: seasonal profiles indicate vernal change of miRNA activity.

Nicole Ludwig1,2, Anne Hecksteden3, Mustafa Kahraman4,5, Tobias Fehlmann4, Thomas Laufer4,5, Fabian Kern4, Tim Meyer3, Eckart Meese1, Andreas Keller4, Christina Backes4.   

Abstract

The envisioned application of miRNAs as diagnostic or prognostic biomarkers calls for an in-depth understanding of their distribution and variability in different physiological states. While effects with respect to ethnic origin, age, or gender are known, the inter-individual variability of miRNAs across the four seasons remained largely hidden. We sequentially profiled the complete repertoire of blood-borne miRNAs for 25 physiologically normal individuals in spring, summer, fall, and winter (altogether 95 samples) and validated the results on 292 individuals (919 samples collected with the Mitra home sampling device) by RT-qPCR. Principal variance component analysis suggests that the largest variability observed in miRNA expression is due to individual variability and the individuals' gender. But the results also highlight a deviation of miRNA activity in samples collected during spring time. Following adjustment for multiple testing, remarkable differences are observed between spring and fall (77 miRNAs). The two most dys-regulated miRNAs were miR-181c-5p and miR-106b-5p (adjusted p-value of 0.007). Other significant miRNAs include miR-140-3p, miR-21-3p, and let-7c-5p. The dys-regulation was validated by RT-qPCR. Systems biology analysis further provides strong evidence for the immunological origin of the signals: dys-regulated miRNAs are enriched in CD56 cells and belong to various signalling and immune-system-related pathways. Our data suggest that besides known confounding factors such as age and sex, also the season in which a test is conducted might have a considerable influence on the expression of blood-borne miRNAs and subsequently might interfere with diagnosis based on such signatures.

Entities:  

Keywords:  miRNA expression; seasonal changes

Year:  2019        PMID: 31035857      PMCID: PMC6602417          DOI: 10.1080/15476286.2019.1612217

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  47 in total

1.  A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.

Authors:  B M Bolstad; R A Irizarry; M Astrand; T P Speed
Journal:  Bioinformatics       Date:  2003-01-22       Impact factor: 6.937

2.  A novel whole-blood miRNA signature for a rapid diagnosis of pulmonary tuberculosis.

Authors:  Irene Latorre; Petra Leidinger; Christina Backes; Jose Domínguez; Maria Luiza de Souza-Galvão; Jose Maldonado; Cristina Prat; Juan Ruiz-Manzano; Francisca Sánchez; Irma Casas; Andreas Keller; Hagen von Briesen; Hernando Knobel; Eckart Meese; Andreas Meyerhans
Journal:  Eur Respir J       Date:  2015-02-05       Impact factor: 16.671

3.  miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions.

Authors:  Chih-Hung Chou; Sirjana Shrestha; Chi-Dung Yang; Nai-Wen Chang; Yu-Ling Lin; Kuang-Wen Liao; Wei-Chi Huang; Ting-Hsuan Sun; Siang-Jyun Tu; Wei-Hsiang Lee; Men-Yee Chiew; Chun-San Tai; Ting-Yen Wei; Tzi-Ren Tsai; Hsin-Tzu Huang; Chung-Yu Wang; Hsin-Yi Wu; Shu-Yi Ho; Pin-Rong Chen; Cheng-Hsun Chuang; Pei-Jung Hsieh; Yi-Shin Wu; Wen-Liang Chen; Meng-Ju Li; Yu-Chun Wu; Xin-Yi Huang; Fung Ling Ng; Waradee Buddhakosai; Pei-Chun Huang; Kuan-Chun Lan; Chia-Yen Huang; Shun-Long Weng; Yeong-Nan Cheng; Chao Liang; Wen-Lian Hsu; Hsien-Da Huang
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

4.  Comparative profiling of differentially expressed microRNAs in estrous ovaries of Kazakh sheep in different seasons.

Authors:  Manjun Zhai; Yifan Xie; Huihui Liang; Xiaoping Lei; Zongsheng Zhao
Journal:  Gene       Date:  2018-04-25       Impact factor: 3.688

5.  MiRTargetLink--miRNAs, Genes and Interaction Networks.

Authors:  Maarten Hamberg; Christina Backes; Tobias Fehlmann; Martin Hart; Benjamin Meder; Eckart Meese; Andreas Keller
Journal:  Int J Mol Sci       Date:  2016-04-14       Impact factor: 5.923

6.  Winter to summer change in vitamin D status reduces systemic inflammation and bioenergetic activity of human peripheral blood mononuclear cells.

Authors:  Emily K Calton; Kevin N Keane; Raquel Raizel; Jordan Rowlands; Mario J Soares; Philip Newsholme
Journal:  Redox Biol       Date:  2017-04-13       Impact factor: 11.799

7.  A blood based 12-miRNA signature of Alzheimer disease patients.

Authors:  Petra Leidinger; Christina Backes; Stephanie Deutscher; Katja Schmitt; Sabine C Mueller; Karen Frese; Jan Haas; Klemens Ruprecht; Friedemann Paul; Cord Stähler; Christoph J G Lang; Benjamin Meder; Tamas Bartfai; Eckart Meese; Andreas Keller
Journal:  Genome Biol       Date:  2013-07-29       Impact factor: 13.583

8.  Global population-specific variation in miRNA associated with cancer risk and clinical biomarkers.

Authors:  Renata A Rawlings-Goss; Michael C Campbell; Sarah A Tishkoff
Journal:  BMC Med Genomics       Date:  2014-08-28       Impact factor: 3.063

9.  miRNAs and sports: tracking training status and potentially confounding diagnoses.

Authors:  Anne Hecksteden; Petra Leidinger; Christina Backes; Stefanie Rheinheimer; Mark Pfeiffer; Alexander Ferrauti; Michael Kellmann; Farbod Sedaghat-Hamedani; Benjamin Meder; Eckart Meese; Tim Meyer; Andreas Keller
Journal:  J Transl Med       Date:  2016-07-26       Impact factor: 5.531

10.  MicroRNA in diagnosis and therapy monitoring of early-stage triple-negative breast cancer.

Authors:  Mustafa Kahraman; Anne Röske; Thomas Laufer; Tobias Fehlmann; Christina Backes; Fabian Kern; Jochen Kohlhaas; Hannah Schrörs; Anna Saiz; Cassandra Zabler; Nicole Ludwig; Peter A Fasching; Reiner Strick; Matthias Rübner; Matthias W Beckmann; Eckart Meese; Andreas Keller; Michael G Schrauder
Journal:  Sci Rep       Date:  2018-08-02       Impact factor: 4.379

View more
  6 in total

1.  Competitive learning suggests circulating miRNA profiles for cancers decades prior to diagnosis.

Authors:  Andreas Keller; Tobias Fehlmann; Christina Backes; Fabian Kern; Randi Gislefoss; Hilde Langseth; Trine B Rounge; Nicole Ludwig; Eckart Meese
Journal:  RNA Biol       Date:  2020-06-16       Impact factor: 4.652

2.  Seasonally variant gene expression in full-term human placenta.

Authors:  Danielle A Clarkson-Townsend; Elizabeth Kennedy; Todd M Everson; Maya A Deyssenroth; Amber A Burt; Ke Hao; Jia Chen; Machelle T Pardue; Carmen J Marsit
Journal:  FASEB J       Date:  2020-06-23       Impact factor: 5.191

Review 3.  Extracellular Vesicles and Their Associated miRNAs as Potential Biomarkers in Intracranial Aneurysm.

Authors:  Yuman Li; Jiahao Wen; Dingyue Liang; Haitao Sun
Journal:  Front Mol Biosci       Date:  2022-06-20

Review 4.  Circulating Exosomal miRNA as Diagnostic Biomarkers of Neurodegenerative Diseases.

Authors:  Lin Wang; Lijuan Zhang
Journal:  Front Mol Neurosci       Date:  2020-04-15       Impact factor: 5.639

5.  Common diseases alter the physiological age-related blood microRNA profile.

Authors:  Tobias Fehlmann; Benoit Lehallier; Nicholas Schaum; Oliver Hahn; Mustafa Kahraman; Yongping Li; Nadja Grammes; Lars Geffers; Christina Backes; Rudi Balling; Fabian Kern; Rejko Krüger; Frank Lammert; Nicole Ludwig; Benjamin Meder; Bastian Fromm; Walter Maetzler; Daniela Berg; Kathrin Brockmann; Christian Deuschle; Anna-Katharina von Thaler; Gerhard W Eschweiler; Sofiya Milman; Nir Barziliai; Matthias Reichert; Tony Wyss-Coray; Eckart Meese; Andreas Keller
Journal:  Nat Commun       Date:  2020-11-24       Impact factor: 14.919

Review 6.  Epigenetic Regulation of Inflammatory Responses in the Context of Physical Activity.

Authors:  Maciej Tarnowski; Patrycja Kopytko; Katarzyna Piotrowska
Journal:  Genes (Basel)       Date:  2021-08-25       Impact factor: 4.096

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.