Literature DB >> 32456538

Competitive learning suggests circulating miRNA profiles for cancers decades prior to diagnosis.

Andreas Keller1,2, Tobias Fehlmann1, Christina Backes1, Fabian Kern1, Randi Gislefoss3, Hilde Langseth3,4, Trine B Rounge3,5, Nicole Ludwig6, Eckart Meese6.   

Abstract

MicroRNAs are regulators of gene expressionand may be key markers in liquid biopsy.Early diagnosis is an effective means to increase patients' overall survival. We generated genome-wide miRNA profiles from serum of patients and controls from the population-based Janus Serum Bank (JSB) and analysed them by bioinformatics and artificial intelligence approaches. JSB contains sera from 318,628 originally healthy persons, more than 96,000 of whom developed cancer. We selected 210 serum samples from patients with lung, colon or breast cancer at three time points prior to diagnosis (up to 32 years prior to diagnosis with median 5 years interval between TPs), one time-point after diagnosis and from individually matched controls. The controls were matched on age and year of all pre-diagnostic sampling time-points for the corresponding case. Using ANOVA we report 70 significantly deregulated markers (adjusted p-value<0.05). The driver for the significance was the diagnostic time point (miR-575, miR-6821-5p, miR-630 with adjusted p-values<10-10). Further, 91miRNAs were differently expressed in pre-diagnostic samples as compared to controls (nominal p < 0.05). Self-organized maps (SOMs)indicated larges effects in lung cancer samples while breast cancer samples showed the least pronounced changes. SOMsalsohighlighted cancer and time point specific miRNA dys-regulation. Intriguingly, a detailed breakdown of the results highlighted that 51% of all miRNAs were highly specific, either for a time-point or a cancer entity. Pathway analysis highlighted 12 pathways including Hipo signalling and ABC transporters.Our results indicate that tumours may be indicated by serum miRNAs decades prior the clinical manifestation.

Entities:  

Keywords:  artificial intelligence; bioinformatics; breast cancer; cancer; colon cancer; liquid biopsy; lung cancer; miRNA; non-coding RNA

Year:  2020        PMID: 32456538      PMCID: PMC7549715          DOI: 10.1080/15476286.2020.1771945

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  39 in total

1.  Long-term stability of serum components in the Janus Serum Bank.

Authors:  Randi E Gislefoss; Tom K Grimsrud; Lars Mørkrid
Journal:  Scand J Clin Lab Invest       Date:  2008       Impact factor: 1.713

2.  Cohort Profile Update: The Janus Serum Bank Cohort in Norway.

Authors:  Kirsti Vik Hjerkind; Randi E Gislefoss; Steinar Tretli; Wenche Nystad; Tone Bjørge; Anders Engeland; Haakon E Meyer; Kristin Holvik; Giske Ursin; Hilde Langseth
Journal:  Int J Epidemiol       Date:  2017-08-01       Impact factor: 7.196

3.  Influence of the confounding factors age and sex on microRNA profiles from peripheral blood.

Authors:  Benjamin Meder; Christina Backes; Jan Haas; Petra Leidinger; Cord Stähler; Thomas Großmann; Britta Vogel; Karen Frese; Evangelos Giannitsis; Hugo A Katus; Eckart Meese; Andreas Keller
Journal:  Clin Chem       Date:  2014-06-30       Impact factor: 8.327

4.  Sources to variability in circulating human miRNA signatures.

Authors:  Andreas Keller; Trine Rounge; Christina Backes; Nicole Ludwig; Randi Gislefoss; Petra Leidinger; Hilde Langseth; Eckart Meese
Journal:  RNA Biol       Date:  2017-09-13       Impact factor: 4.652

5.  An estimate of the total number of true human miRNAs.

Authors:  Julia Alles; Tobias Fehlmann; Ulrike Fischer; Christina Backes; Valentina Galata; Marie Minet; Martin Hart; Masood Abu-Halima; Friedrich A Grässer; Hans-Peter Lenhof; Andreas Keller; Eckart Meese
Journal:  Nucleic Acids Res       Date:  2019-04-23       Impact factor: 16.971

Review 6.  C-reactive protein, interleukin-6 and the risk of colorectal cancer: a meta-analysis.

Authors:  Bo Zhou; Bin Shu; Jue Yang; Jing Liu; Tao Xi; Yingying Xing
Journal:  Cancer Causes Control       Date:  2014-07-23       Impact factor: 2.506

7.  Distribution of microRNA biomarker candidates in solid tissues and body fluids.

Authors:  Tobias Fehlmann; Nicole Ludwig; Christina Backes; Eckart Meese; Andreas Keller
Journal:  RNA Biol       Date:  2016-09-29       Impact factor: 4.652

8.  Searching for early breast cancer biomarkers by serum protein profiling of pre-diagnostic serum; a nested case-control study.

Authors:  Annemieke W J Opstal-van Winden; Esmeralda J M Krop; Monica H Kåredal; Marie-Christine W Gast; Christian H Lindh; Marina C Jeppsson; Bo A G Jönsson; Diederick E Grobbee; Petra H M Peeters; Jos H Beijnen; Carla H van Gils; Roel C H Vermeulen
Journal:  BMC Cancer       Date:  2011-08-26       Impact factor: 4.430

9.  miRNAs can be generally associated with human pathologies as exemplified for miR-144.

Authors:  Andreas Keller; Petra Leidinger; Britta Vogel; Christina Backes; Abdou ElSharawy; Valentina Galata; Sabine C Mueller; Sabine Marquart; Michael G Schrauder; Reiner Strick; Andrea Bauer; Jörg Wischhusen; Markus Beier; Jochen Kohlhaas; Hugo A Katus; Jörg Hoheisel; Andre Franke; Benjamin Meder; Eckart Meese
Journal:  BMC Med       Date:  2014-12-03       Impact factor: 8.775

10.  DNA methylation changes measured in pre-diagnostic peripheral blood samples are associated with smoking and lung cancer risk.

Authors:  Laura Baglietto; Erica Ponzi; Philip Haycock; Allison Hodge; Manuela Bianca Assumma; Chol-Hee Jung; Jessica Chung; Francesca Fasanelli; Florence Guida; Gianluca Campanella; Marc Chadeau-Hyam; Kjell Grankvist; Mikael Johansson; Ugo Ala; Paolo Provero; Ee Ming Wong; Jihoon Joo; Dallas R English; Nabila Kazmi; Eiliv Lund; Christian Faltus; Rudolf Kaaks; Angela Risch; Myrto Barrdahl; Torkjel M Sandanger; Melissa C Southey; Graham G Giles; Mattias Johansson; Paolo Vineis; Silvia Polidoro; Caroline L Relton; Gianluca Severi
Journal:  Int J Cancer       Date:  2016-10-11       Impact factor: 7.396

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  3 in total

1.  Expression level of miRNA in the peripheral blood of patients with multiple myeloma and its clinical significance.

Authors:  Guangbao Li; Jianwen Yin; Zutong Wu; Shizhong Li; Aijun He; Zhenzhen Sun
Journal:  Am J Transl Res       Date:  2021-05-15       Impact factor: 4.060

2.  miR-365 (microRNA): Potential Biomarker in Oral Squamous Cell Carcinoma Exosomes and Extracellular Vesicles.

Authors:  Jeffery Coon; Karl Kingsley; Katherine M Howard
Journal:  Int J Mol Sci       Date:  2020-07-27       Impact factor: 5.923

3.  Assessment of a Serum Microrna Risk Score for Colorectal Cancer among Participants of Screening Colonoscopy at Various Stages of Colorectal Carcinogenesis.

Authors:  Janhavi R Raut; Megha Bhardwaj; Tobias Niedermaier; Kaya Miah; Petra Schrotz-King; Hermann Brenner
Journal:  Cells       Date:  2022-08-08       Impact factor: 7.666

  3 in total

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