Literature DB >> 31035826

The Genomics of Oryza Species Provides Insights into Rice Domestication and Heterosis.

Erwang Chen1,2, Xuehui Huang3, Zhixi Tian4, Rod A Wing5, Bin Han1.   

Abstract

Here, we review recent progress in genetic and genomic studies of the diversity of Oryza species. In recent years, unlocking the genetic diversity of Oryza species has provided insights into the genomics of rice domestication, heterosis, and complex traits. Genome sequencing and analysis of numerous wild rice (Oryza rufipogon) and Asian cultivated rice (Oryza sativa) accessions have enabled the identification of genome-wide signatures of rice domestication and the unlocking of the origin of Asian cultivated rice. Moreover, similar studies on genome variations of African rice (Oryza glaberrima) cultivars and their closely related wild progenitor Oryza barthii accessions have provided strong evidence to support a theory of independent domestication in African rice. Integrated genomic approaches have efficiently investigated many heterotic loci in hybrid rice underlying yield heterosis advantages and revealed the genomic architecture of rice heterosis. We conclude that in-depth unlocking of genetic variations among Oryza species will further enhance rice breeding.

Entities:  

Keywords:  complex traits; domestication; genome sequencing; genotyping; heterosis; hybrid vigor; plant fitness; rice breeding

Year:  2019        PMID: 31035826     DOI: 10.1146/annurev-arplant-050718-100320

Source DB:  PubMed          Journal:  Annu Rev Plant Biol        ISSN: 1543-5008            Impact factor:   26.379


  18 in total

Review 1.  The importance of genomic variation for biodiversity, ecosystems and people.

Authors:  Madlen Stange; Rowan D H Barrett; Andrew P Hendry
Journal:  Nat Rev Genet       Date:  2020-10-16       Impact factor: 53.242

Review 2.  Rice functional genomics: decades' efforts and roads ahead.

Authors:  Rongzhi Chen; Yiwen Deng; Yanglin Ding; Jingxin Guo; Jie Qiu; Bing Wang; Changsheng Wang; Yongyao Xie; Zhihua Zhang; Jiaxin Chen; Letian Chen; Chengcai Chu; Guangcun He; Zuhua He; Xuehui Huang; Yongzhong Xing; Shuhua Yang; Daoxin Xie; Yaoguang Liu; Jiayang Li
Journal:  Sci China Life Sci       Date:  2021-12-07       Impact factor: 6.038

3.  Whole genome sequencing of ASD 16 and ADT 43 to identify predominant grain size and starch associated alleles in rice.

Authors:  Jayakanthan Mannu; Abillasha Mohan Latha; Shalini Rajagopal; Hari Dharani A Lalitha; Raveendran Muthurajan; Arul Loganathan; Mohankumar Subbarayalu; Gnanam Ramasamy; Ramalingam Jegadeesan
Journal:  Mol Biol Rep       Date:  2022-10-06       Impact factor: 2.742

4.  Genome-Wide Comprehensive Survey of the Subtilisin-Like Proteases Gene Family Associated With Rice Caryopsis Development.

Authors:  Kaifeng Zheng; Lu Pang; Xiuhua Xue; Ping Gao; Heping Zhao; Yingdian Wang; Shengcheng Han
Journal:  Front Plant Sci       Date:  2022-06-20       Impact factor: 6.627

Review 5.  Interspecific Hybridization Is an Important Driving Force for Origin and Diversification of Asian Cultivated Rice Oryza sativa L.

Authors:  Jiawu Zhou; Ying Yang; Yonggang Lv; Qiuhong Pu; Jing Li; Yu Zhang; Xianneng Deng; Min Wang; Jie Wang; Dayun Tao
Journal:  Front Plant Sci       Date:  2022-06-30       Impact factor: 6.627

Review 6.  Genetics and Genomics of African Rice (Oryza glaberrima Steud) Domestication.

Authors:  Peterson W Wambugu; Marie-Noelle Ndjiondjop; Robert Henry
Journal:  Rice (N Y)       Date:  2021-01-07       Impact factor: 4.783

7.  The EpiDiverse Plant Epigenome-Wide Association Studies (EWAS) Pipeline.

Authors:  Sultan Nilay Can; Adam Nunn; Dario Galanti; David Langenberger; Claude Becker; Katharina Volmer; Katrin Heer; Lars Opgenoorth; Noe Fernandez-Pozo; Stefan A Rensing
Journal:  Epigenomes       Date:  2021-05-04

8.  Dynamic effects of interacting genes underlying rice flowering-time phenotypic plasticity and global adaptation.

Authors:  Tingting Guo; Qi Mu; Jinyu Wang; Adam E Vanous; Akio Onogi; Hiroyoshi Iwata; Xianran Li; Jianming Yu
Journal:  Genome Res       Date:  2020-04-16       Impact factor: 9.043

9.  Evaluation of Whole-Genome Sequence, Genetic Diversity, and Agronomic Traits of Basmati Rice (Oryza sativa L.).

Authors:  D S Kishor; Jeonghwan Seo; Joong Hyoun Chin; Hee-Jong Koh
Journal:  Front Genet       Date:  2020-02-21       Impact factor: 4.599

10.  Diverse genetic mechanisms underlie worldwide convergent rice feralization.

Authors:  Jie Qiu; Lei Jia; Dongya Wu; Xifang Weng; Lijuan Chen; Jian Sun; Meihong Chen; Lingfeng Mao; Bowen Jiang; Chuyu Ye; Guilherme Menegol Turra; Longbiao Guo; Guoyou Ye; Qian-Hao Zhu; Toshiyuki Imaizumi; Beng-Kah Song; Laura Scarabel; Aldo Merotto; Kenneth M Olsen; Longjiang Fan
Journal:  Genome Biol       Date:  2020-03-26       Impact factor: 13.583

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