Literature DB >> 31026516

Classification of temporal ICA components for separating global noise from fMRI data: Reply to Power.

Matthew F Glasser1, Timothy S Coalson2, Janine D Bijsterbosch3, Samuel J Harrison4, Michael P Harms5, Alan Anticevic6, David C Van Essen2, Stephen M Smith3.   

Abstract

We respond to a critique of our temporal Independent Components Analysis (ICA) method for separating global noise from global signal in fMRI data that focuses on the signal versus noise classification of several components. While we agree with several of Power's comments, we provide evidence and analysis to rebut his major criticisms and to reassure readers that temporal ICA remains a powerful and promising denoising approach.
Copyright © 2019 Elsevier Inc. All rights reserved.

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Year:  2019        PMID: 31026516      PMCID: PMC6591096          DOI: 10.1016/j.neuroimage.2019.04.046

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  13 in total

1.  Methods to detect, characterize, and remove motion artifact in resting state fMRI.

Authors:  Jonathan D Power; Anish Mitra; Timothy O Laumann; Abraham Z Snyder; Bradley L Schlaggar; Steven E Petersen
Journal:  Neuroimage       Date:  2013-08-29       Impact factor: 6.556

2.  Separating respiratory-variation-related fluctuations from neuronal-activity-related fluctuations in fMRI.

Authors:  Rasmus M Birn; Jason B Diamond; Monica A Smith; Peter A Bandettini
Journal:  Neuroimage       Date:  2006-04-24       Impact factor: 6.556

3.  Low frequency BOLD fluctuations during resting wakefulness and light sleep: a simultaneous EEG-fMRI study.

Authors:  Silvina G Horovitz; Masaki Fukunaga; Jacco A de Zwart; Peter van Gelderen; Susan C Fulton; Thomas J Balkin; Jeff H Duyn
Journal:  Hum Brain Mapp       Date:  2008-06       Impact factor: 5.038

4.  The respiration response function: the temporal dynamics of fMRI signal fluctuations related to changes in respiration.

Authors:  Rasmus M Birn; Monica A Smith; Tyler B Jones; Peter A Bandettini
Journal:  Neuroimage       Date:  2007-12-15       Impact factor: 6.556

5.  Temporal ICA has not properly separated global fMRI signals: A comment on Glasser et al. (2018).

Authors:  Jonathan D Power
Journal:  Neuroimage       Date:  2019-03-05       Impact factor: 6.556

6.  Decoding wakefulness levels from typical fMRI resting-state data reveals reliable drifts between wakefulness and sleep.

Authors:  Enzo Tagliazucchi; Helmut Laufs
Journal:  Neuron       Date:  2014-05-07       Impact factor: 17.173

7.  The impact of traditional neuroimaging methods on the spatial localization of cortical areas.

Authors:  Timothy S Coalson; David C Van Essen; Matthew F Glasser
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-20       Impact factor: 11.205

Review 8.  The Human Connectome Project's neuroimaging approach.

Authors:  Matthew F Glasser; Stephen M Smith; Daniel S Marcus; Jesper L R Andersson; Edward J Auerbach; Timothy E J Behrens; Timothy S Coalson; Michael P Harms; Mark Jenkinson; Steen Moeller; Emma C Robinson; Stamatios N Sotiropoulos; Junqian Xu; Essa Yacoub; Kamil Ugurbil; David C Van Essen
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

9.  Resting fluctuations in arterial carbon dioxide induce significant low frequency variations in BOLD signal.

Authors:  Richard G Wise; Kojiro Ide; Marc J Poulin; Irene Tracey
Journal:  Neuroimage       Date:  2004-04       Impact factor: 6.556

10.  Ridding fMRI data of motion-related influences: Removal of signals with distinct spatial and physical bases in multiecho data.

Authors:  Jonathan D Power; Mark Plitt; Stephen J Gotts; Prantik Kundu; Valerie Voon; Peter A Bandettini; Alex Martin
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-12       Impact factor: 11.205

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  12 in total

1.  Cerebral cortical folding, parcellation, and connectivity in humans, nonhuman primates, and mice.

Authors:  David C Van Essen; Chad J Donahue; Timothy S Coalson; Henry Kennedy; Takuya Hayashi; Matthew F Glasser
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-23       Impact factor: 11.205

2.  Temporal fluctuations in the brain's modular architecture during movie-watching.

Authors:  Richard F Betzel; Lisa Byrge; Farnaz Zamani Esfahlani; Daniel P Kennedy
Journal:  Neuroimage       Date:  2020-02-29       Impact factor: 6.556

3.  A dynamic gradient architecture generates brain activity states.

Authors:  Jesse A Brown; Alex J Lee; Lorenzo Pasquini; William W Seeley
Journal:  Neuroimage       Date:  2022-07-29       Impact factor: 7.400

4.  Performance of Temporal and Spatial Independent Component Analysis in Identifying and Removing Low-Frequency Physiological and Motion Effects in Resting-State fMRI.

Authors:  Ali M Golestani; J Jean Chen
Journal:  Front Neurosci       Date:  2022-06-10       Impact factor: 5.152

5.  Impact of Independent Component Analysis Dimensionality on the Test-Retest Reliability of Resting-State Functional Connectivity.

Authors:  Yizhou Ma; Angus W MacDonald Iii
Journal:  Brain Connect       Date:  2021-08-23

6.  Take a deep breath: Multiecho fMRI denoising effectively removes head motion artifacts, obviating the need for global signal regression.

Authors:  R Nathan Spreng; Sara Fernández-Cabello; Gary R Turner; W Dale Stevens
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-27       Impact factor: 12.779

7.  Global waves synchronize the brain's functional systems with fluctuating arousal.

Authors:  Ryan V Raut; Abraham Z Snyder; Anish Mitra; Dov Yellin; Naotaka Fujii; Rafael Malach; Marcus E Raichle
Journal:  Sci Adv       Date:  2021-07-21       Impact factor: 14.136

8.  A Domain-General Cognitive Core Defined in Multimodally Parcellated Human Cortex.

Authors:  Moataz Assem; Matthew F Glasser; David C Van Essen; John Duncan
Journal:  Cereb Cortex       Date:  2020-06-30       Impact factor: 5.357

9.  Time of day is associated with paradoxical reductions in global signal fluctuation and functional connectivity.

Authors:  Csaba Orban; Ru Kong; Jingwei Li; Michael W L Chee; B T Thomas Yeo
Journal:  PLoS Biol       Date:  2020-02-18       Impact factor: 8.029

10.  Functional Disruptions of the Brain in Low Back Pain: A Potential Imaging Biomarker of Functional Disability.

Authors:  Bidhan Lamichhane; Dinal Jayasekera; Rachel Jakes; Wilson Z Ray; Eric C Leuthardt; Ammar H Hawasli
Journal:  Front Neurol       Date:  2021-07-14       Impact factor: 4.003

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