| Literature DB >> 31024843 |
Hyothaek Lee1, Eungman Lee1, Nalee Kim1, Joo Ho Kim1, Kwangwoo Park1, Ho Lee1, Jaehee Chun1, Jae-Ik Shin1, Jee Suk Chang1, Jin Sung Kim1.
Abstract
Background: While atlas segmentation (AS) has proven to be a time-saving and promising method for radiation therapy contouring, optimal methods for its use have not been well-established. Therefore, we investigated the relationship between the size of the atlas patient population and the atlas segmentation auto contouring (AC) performance.Entities:
Keywords: atlas segmentation; atlas-based auto-segmentation; auto-contouring; contouring; segmentation
Year: 2019 PMID: 31024843 PMCID: PMC6465886 DOI: 10.3389/fonc.2019.00239
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
Patient characteristics in this study.
| Target patients (10) | 7 | 3 | 56.3 | 8 | 1 | 0 |
| Atlas patients (100) | 68 | 32 | 53.9 | 77 | 10 | 6 |
Figure 1Images of two patients with (left) and without (right) dental artifacts.
Figure 2Representative workflow image of MIM atlas segmentation process. Times t1, t3, and t5 are defined as MIM time; times t2 and t4 are defined as operator time.
Figure 3Atlas segmentation of mandible and thyroid of target patients (TP) using MIM to generate auto-segmentation; (A) simultaneous atlas segmentation and (B) independent atlas segmentation.
Mean dice similarity coefficient and hausdorff distance values for multiple n atlas libraries.
| SAS | Mandible | DSC (sd) | 0.90 (0.03) | 0.90 (0.06) | 0.90 (0.01) | 0.90 (0.02) | 0.89 (0.02) |
| HD (sd) | 10.72 (4.82) | 10.08 (5.62) | 8.33 (1.76) | 10.00 (4.99) | 12.07 (6.94) | ||
| Thyroid | DSC (sd) | 0.73 (0.08) | 0.71 (0.16) | 0.71 (0.16) | 0.72 (0.16) | 0.71 (0.14) | |
| HD (sd) | 14.52 (4.33) | 14.35 (4.81) | 13.55 (5.56) | 14.23 (5.20) | 12.28 (3.06) | ||
| IAS | Mandible | DSC (sd) | 0.91 (0.03) | 0.92 (0.01) | 0.92 (0.01) | 0.91 (0.02) | 0.90 (0.03) |
| HD (sd) | 9.39 (4.47) | 7.55 (2.00) | 6.73 (1.31) | 7.46 (1.69) | 10.10 (6.52) | ||
| Thyroid | DSC (sd) | 0.77 (0.08) | 0.77 (0.07) | 0.79 (0.06) | 0.75 (0.07) | 0.72 (0.13) | |
| HD (sd) | 11.98 (2.28) | 12.37 (2.66) | 10.17 (2.89) | 11.65 (3.73) | 12.88 (3.94) |
Figure 4Comparison of metrics among n atlas groups. Simultaneous atlas segmentation (SAS) is represented as dashed line and independent atlas segmentation (IAS) is represented as bold line. Good overlap limit of 0.75 and 0.85 are represented as straight horizontal lines in (A,B). (A) Mean Dice Similarity Coefficient for mandible. (B) Mean Dice Similarity Coefficient for thyroid. (C) Mean Hausdorff Distance for mandible. (D) Mean Hausdorff Distance for thyroid.
Mandible metrics for n = 80 atlas-generated atlas-based auto-segmentation: simultaneous and independent atlas segmentation (SAS and IAS).
| SAS | DSC | 0.91 | 0.91 | 0.86 | 0.90 | 0.89 | 0.90 | 0.86 | 0.92 | 0.92 | 0.89 | 0.90 (0.02) |
| HD (mm) | 7.65 | 9.00 | 13.65 | 7.44 | 9.68 | 7.34 | 22.59 | 8.21 | 4.61 | 9.86 | 10.00 (4.99) | |
| IAS | DSC | 0.93 | 0.91 | 0.89 | 0.90 | 0.89 | 0.93 | 0.93 | 0.91 | 0.90 | 0.89 | 0.91 (0.02) |
| HD (mm) | 6.01 | 6.35 | 7.81 | 8.83 | 10.12 | 6.36 | 5.41 | 6.39 | 7.31 | 10.06 | 7.46 (1.69) | |
Patient without teeth.
Figure 5Auto-segmented contour results with open mouth target patient. (A) Atlas patient CT and its contour. (B) Target patient (open mouth) CT and selected atlas patient's contour. (C) Atlas segmentation-generated contour (AC).