| Literature DB >> 31020755 |
Carla A Green1, Nancy A Perrin1,2, Brian Hazlehurst1, Shannon L Janoff1, Angela DeVeaugh-Geiss3, David S Carrell4, Carlos G Grijalva5, Caihua Liang6,7, Cheryl L Enger6,7, Paul M Coplan8,9.
Abstract
PURPOSE: The study aims to develop and validate algorithms to identify and classify opioid overdoses using claims and other coded data, and clinical text extracted from electronic health records using natural language processing (NLP).Entities:
Keywords: abuse; algorithms; heroin; methods; opioid overdose; pharmacoepidemiology; suicide
Mesh:
Substances:
Year: 2019 PMID: 31020755 PMCID: PMC6767606 DOI: 10.1002/pds.4772
Source DB: PubMed Journal: Pharmacoepidemiol Drug Saf ISSN: 1053-8569 Impact factor: 2.890
ICD‐9 and ICD‐10 codes used in the initial algorithm to detect opioid overdosesa
|
|
| |
|---|---|---|
| Poisoning by opium (alkaloids) unspecified | 965.00 | |
| Poisoning by heroin | 965.01 | |
| Poisoning by methadone | 965.02 | |
| Poisoning by other opiates and related narcotics | 965.09 | |
| Accidental poisoning by heroin | E850.0 | |
| Accidental poisoning by methadone | E850.1 | |
| Accidental poisoning by other opiates and related narcotics | E850.2 | |
| COD: poisoning by opiates and related narcotics | 9650 | |
| COD: poisoning by opium | T40.0 | |
| COD: poisoning by heroin | T40.1 | |
| COD: poisoning by other opioids | T40.2 | |
| COD: poisoning by methadone | T40.3 | |
| COD: poisoning by other synthetic narcotic | T40.4 | |
| COD: accidental poisoning by and exposure to narcotics and psychodysleptics, not elsewhere classified | X42 | |
| COD: intentional self‐poisoning by and exposure to narcotics and psychodysleptics, not elsewhere classified | X62 | |
| COD: undetermined poisoning by and exposure to narcotics and psychodysleptics, not elsewhere classified | Y12 |
Note. COD: cause of death; ICD‐9/10: International Classification of Diseases, Ninth/Tenth Revision.
Presence of any of these codes was considered indicative of the presence of an OOD.
Though the study period was prior to the nationwide switch to ICD‐10 diagnostic codes, ICD‐10 cause‐of‐death codes were in use nationwide throughout the study period.
Development and validation sample descriptions
| Sampling Goal | Events Identified by: | Base Population | Development Sample | Validation Sample |
|---|---|---|---|---|
| Suspected overdose cases | Opioid poisoning diagnostic codes | 2,271 | 483 | 848 |
| Opioid adverse effects diagnostic codes | 254 | 78 | 103 | |
| At risk for overdose | Pain, mental health, and substance abuse diagnostic codes | 87,550 | 222 with ≥30 days supply of ER/LA opioids | 373 with ≥30 days supply of ER/LA opioids |
| 223 with ≤30 days supply of ER/LA opioids | 372 with ≤30 days supply of ER/LA opioids | |||
| Total | 1006 | 1696 | ||
Note. ER/LA: extended‐release/long‐acting.
ICD‐9 and ICD‐10 codes tested in the model to predict if an opioid overdose was related to heroin
| E950.0 | Suicide and self‐inflicted poisoning by solid or liquid substances |
| E965.01 | Poisoning by heroin |
| E850.0 | Accidental poisoning by heroin |
| T40.1 | COD: poisoning by heroin |
Note. COD: cause of death; ICD‐9/10: International Classification of Diseases, Ninth/Tenth Revision.
ICD‐9 diagnostic codes evaluated to predict whether or not an opioid overdose was intentional
| Suicide/Suicide Attempt | |
|---|---|
| E950.0 | Suicide and self‐inflicted poisoning by solid or liquid substances |
| E950.1 | Barbiturates |
| E950.2 | Sedatives and hypnotics |
| E950.3 | Tranquilizers and other psychotropic agents |
| E950.4 | Other specified drugs and medicinal substances |
| E950.5 | Unspecified drug or medicinal substance |
| E950.9 | Other and unspecified solid and liquid substances |
| E956 | Suicide and self‐inflicted injury by cutting and piercing instrument |
| E958.8 | Suicide and self‐inflected injury by other specified means |
| E958.9 | Suicide and self‐inflicted injury by unspecified means |
| V62.84 | Suicidal ideation |
Note. ICD‐9: International Classification of Diseases, Ninth Revision.
Diagnoses tested for predicting suicides/suicide attempts
| Diagnoses |
|
|---|---|
| Alcohol use disorders | 291.x, 303.x, 305.0 |
| Anxiety disorders | 300.0, 300.2, 300.3, 309.20, 309.21, 309.24, 309.81 |
| Bipolar disorders | 296.0, 296.1, 296.4–296.7, 296.80, 296.81, 296.89 |
| Drug use disorders | 292.x, 304.x, 305.2–305.9 |
| Other psychoses | 297.1, 297.3, 298.8, 298.9, 301.22 |
| Schizophrenia spectrum disorders | 295.x |
| Tobacco use disorder | 305.1, 649.0, 989.84, V15.82 |
Note. ICD‐9: International Classification of Diseases, Ninth Revision.
Diagnoses and other variables tested for identifying substance abuse involvement in opioid‐related overdoses
| Diagnoses and Other Variables |
|
|---|---|
| Poisoning by heroin | 965.01 |
| Accidental poisoning by heroin | E850.0 |
| Poisoning by heroin | T40.1(COD) |
| Poisoning by opium (alkaloids), unspecified | 965.00 |
| Poisoning by methadone | 965.02 |
| Poisoning by other opiates/narcotics | 965.09 |
| Opioid dependence | 304.00–304.03, 304.70–304.72 |
| Opioid abuse | 305.50–305.53 |
| Drug use disorders | 292.x, 304.x, 305.2–305.9 |
| Alcohol use disorders | 291.x, 303.x, 305.0 |
| Tobacco use disorders | 305.1, 649.0, 989.84, V15.82 |
| Count of unique opioid prescribers in the 2 years prior to event | n/a |
| Count of early ER/LA opioid dispenses in the 2 years prior to event (early refill defined as two consecutive fills of an ER/LA where the number of days between prescriptions was less than or equal to 85% of the days' supply in the first prescription) | n/a |
| Count of early IR opioid dispenses in 2 years prior to the event | n/a |
| Medicaid/Medicare dual eligibility | n/a |
Note. COD: cause of death; ER/LA: extended‐release/long‐acting; ICD‐9/10: International Classification of Diseases, Ninth/Tenth Revision.
Natural language processing (NLP) classifications and their alignment with gold standard chart review
| NLP‐only Classification | Chart Review Gold Standard Comparator | |
|---|---|---|
| Event type, irrespective of substance involved | Intentional overdose (suicide/suicide attempt) | Intentional overdose = clearly or possible |
| Unintentional overdose (excludes intentional overdose) | Unintentional overdose | |
| Overdose of any type (combines intentional and unintentional overdose) | Unintentional overdose or intentional overdose = clearly or possible | |
| Adverse drug event (excludes any overdose) | Adverse drug reaction | |
| Substance involved in overdose or adverse drug event | Heroin | Heroin involved = yes or possible |
| NLP identifies an overdose or adverse drug event in combination with heroin, regardless of other opioid or nonopioid prescription or over‐the‐counter medication | ||
| Opioid only (excludes heroin) | A single opioid event (excludes heroin) | |
| NLP identifies an overdose or adverse drug event in combination with a named opioid (or generic “narcotic”) in the absence of heroin and additional nonopioid prescription or over‐the‐counter medications. | ||
| Polysubstance including opioid (excludes heroin) | A polydrug, opioid event (excludes heroin) | |
| NLP identifies an overdose or adverse drug event in combination with a named opioid (or generic “narcotic”) AND additional nonopioid prescription or over‐the‐counter medications, but in the absence of heroin. | ||
| Any opioid (excludes heroin, include polysubstance) | A single or polydrug opioid event (excludes heroin) | |
| Substance abuse involved in opioid‐related overdose | Prescription medication abuse (whether prescribed or not) | Opioid or nonopioid prescription med abuse = yes, AND NOT heroin = yes or possible in an opioid overdose event |
| NLP identifies an opioid overdose in combination with abuse of medications (ie, nontherapeutic goals/actions noted about prescription medications), or documented conclusion of abuse by clinician. | ||
| Substance abuse (including alcohol abuse or presence) | Alcohol present = yes in an opioid overdose event | |
| NLP identifies an opioid overdose in combination with notations of alcohol abuse or just alcohol present | ||
|
Illicit drug abuse | Abuse of nonprescribed substances = yes in an opioid overdose event | |
| Any substance abuse | Opioid or nonopioid prescription med or nonprescribed substance abuse or alcohol present = yes in an opioid overdose event | |
| Any of the above types of abuse. | ||
| Patient error in opioid‐related overdose or adverse drug event | Patient error (EXCLUDES ALL ABUSE above) | Opioid or nonopioid medication‐taking error = yes AND NOT ABUSE AS DEFINED ABOVE |
| NLP identifies an opioid overdose or adverse drug event in combination with mention of mistake/accident in taking medications |
Cross validation of models with 95% confidence intervals and significance tests comparing the performance in the two samples
| Development Dataset | Validation Dataset |
| |
|---|---|---|---|
| Opioid‐related overdose | |||
| Sensitivity (95% CI) | 97.9 (96.0‐99.0) | 97.2 (95.5‐98.4) | 0.493 |
| Specificity (95% CI) | 88.9 (85.6‐91.6) | 84.6 (81.3‐87.5) | 0.028 |
| PPV (95% CI) | 89.2 (86.4‐91.5) | 87.4 (85.0‐89.3) | 0.3421 |
| NPV (95% CI) | 97.8 (95.9‐98.8) | 96.5 (94.5‐97.8) | 0.205 |
| F‐score | 0.93 | 0.92 | |
| OOD | |||
| Sensitivity (95% CI) | 94.0 (83.5‐98.8) | 91.8 (84.6‐96.4) | 0.635 |
| Specificity (95% CI) | 96.8 (94.5‐98.3) | 99.0 (97.7‐99.7) | 0.018 |
| PPV (95% CI) | 79.7 (69.1‐87.3) | 94.7 (88.3‐97.7) | 0.004 |
| NPV (95% CI) | 99.2 (97.6‐99.7) | 98.4 (97.0‐99.2) | 0.330 |
| F‐score | 0.86 | 0.93 | |
| OOD classified as suicide/suicide attempt | |||
| Sensitivity (95% CI) | 77.4 (70.0‐83.7) | 70.5 (63.8‐76.7) | 0.142 |
| Specificity (95% CI) | 88.1 (83.6‐91.7) | 90.2 (86.9‐92.9) | 0.380 |
| PPV (95% CI) | 79.0 (82.8‐84.0) | 78.9 (73.3‐83.6) | 0.995 |
| NPV (95% CI) | 87.1 (83.4‐90.1) | 85.5 (82.6‐87.9) | 0.551 |
| F‐score | 0.78 | 0.74 | |
| OOD classified as abuse involved | |||
| Sensitivity (95% CI) | 82.0 (73.6‐88.6) | 75.3 (68.2‐81.5) | 0.184 |
| Specificity (95% CI) | 83.4 (76.7‐88.9) | 79.5 (73.6‐84.6) | 0.329 |
| PPV (95% CI) | 77.8 (70.9‐83.4) | 74.0 (68.5‐78.9) | 0.462 |
| NPV (95% CI) | 86.8 (81.4‐90.7) | 80.5 (76.0‐84.4) | 0.117 |
| F‐score | 0.80 | 0.75 | |
| Overdose classified as suicide/suicide attempt using NLP‐enhanced algorithm | |||
| Sensitivity (95% CI) | 88.4 (82.3‐93.0) | 78.7 (72.5‐84.1) | 0.016 |
| Specificity (95% CI) | 91.8 (87.8‐94.8) | 91.0 (87.7‐93.6) | 0.707 |
| PPV (95% CI) | 86.2 (80.6‐90.3) | 81.9 (76.7‐86.2) | 0.278 |
| NPV (95% CI) | 93.2 (89.8‐95.5) | 89.2 (86.3‐91.5) | 0.079 |
| F‐score | 0.87 | 0.80 | |
| Overdose classified as involving abuse using NLP‐enhanced algorithm | |||
| Sensitivity (95% CI) | 90.1 (83.0‐95.0) | 80.5 (73.8‐86.1) | 0.030 |
| Specificity (95% CI) | 79.6 (72.5‐85.6) | 76.3 (70.2‐81.8) | 0.449 |
| PPV (95% CI) | 75.8 (69.5‐81.1) | 72.5 (67.4‐77.2) | 0.517 |
| NPV (95% CI) | 91.9 (86.6‐95.2) | 83.4 (78.7‐87.3) | 0.023 |
| F‐score | 0.82 | 0.76 | |
Note. NLP: natural language processing; OOD: opioid‐related overdose.
Opioid‐related overdose.
Final results of portability assessment of code‐based and NLP‐enhanced algorithms
| KPNW | KPW | Optum | TennCare | |
|---|---|---|---|---|
| OOD | ||||
| Sensitivity | 97.2 | 100.0 | 96.9 | 99.2 |
| Specificity | 84.6 | 89.2 | 100.0 | 92.4 |
| PPV | 87.4 | 84.1 | 100.0 | 91.9 |
| NPV | 96.5 | 100.0 | 96.9 | 99.2 |
| F‐score | 0.92 | 0.92 | 0.98 | 0.95 |
| Heroin | ||||
| Sensitivity | 91.8 | 87.5 | 98.5 | N/A |
| Specificity | 99.0 | 99.3 | 100.0 | N/A |
| PPV | 94.7 | 93.3 | 100.0 | N/A |
| NPV | 98.4 | 98.5 | 99.5 | N/A |
| F‐score | 0.93 | 0.90 | 0.99 | N/A |
| Suicide/suicide attempt | ||||
| Sensitivity | 70.5 | 74.1 | 63.2 | 44.9 |
| Specificity | 90.2 | 86.7 | 91.0 | 87.1 |
| PPV | 78.9 | 74.1 | 81.1 | 64.5 |
| NPV | 85.5 | 86.7 | 80.1 | 75.1 |
| F‐score | 0.74 | 0.74 | 0.67 | 0.53 |
| Suicide/suicide attempt—NLP enhanced | ||||
| Sensitivity | 78.7 | 81.5 | N/A | N/A |
| Specificity | 91.0 | 95.2 | N/A | N/A |
| PPV | 81.9 | 89.8 | N/A | N/A |
| NPV | 89.2 | 90.9 | N/A | N/A |
| F‐score | 0.80 | 0.85 | N/A | N/A |
| Abuse involved | ||||
| Sensitivity | 75.3 | N/A | 67.1 | 41.5 |
| Specificity | 79.5 | N/A | 31.9 | 62.5 |
| PPV | 74.0 | N/A | 46.2 | 29.0 |
| NPV | 80.5 | N/A | 52.6 | 74.4 |
| F‐score | 0.76 | N/A | 0.55 | 0.34 |