| Literature DB >> 31018597 |
Shahid Ikram1, Jawad Ali Shah2, Syed Zubair3, Ijaz Mansoor Qureshi4, Muhammad Bilal5.
Abstract
The application of compressed sensing (CS) to biomedical imaging is sensational since it permits a rationally accurate reconstruction of images by exploiting the image sparsity. The quality of CS reconstruction methods largely depends on the use of various sparsifying transforms, such as wavelets, curvelets or total variation (TV), to recover MR images. As per recently developed mathematical concepts of CS, the biomedical images with sparse representation can be recovered from randomly undersampled data, provided that an appropriate nonlinear recovery method is used. Due to high under-sampling, the reconstructed images have noise like artifacts because of aliasing. Reconstruction of images from CS involves two steps, one for dictionary learning and the other for sparse coding. In this novel framework, we choose Simultaneous code word optimization (SimCO) patch-based dictionary learning that updates the atoms simultaneously, whereas Focal underdetermined system solver (FOCUSS) is used for sparse representation because of a soft constraint on sparsity of an image. Combining SimCO and FOCUSS, we propose a new scheme called SiFo. Our proposed alternating reconstruction scheme learns the dictionary, uses it to eliminate aliasing and noise in one stage, and afterwards restores and fills in the k-space data in the second stage. Experiments were performed using different sampling schemes with noisy and noiseless cases of both phantom and real brain images. Based on various performance parameters, it has been shown that our designed technique outperforms the conventional techniques, like K-SVD with OMP, used in dictionary learning based MRI (DLMRI) reconstruction.Entities:
Keywords: and dictionary learning based MRI (DLMRI); compressed sensing (CS); dictionary learning; focal underdetermined system solver (FOCUSS); magnetic resonance imaging (MRI); simultaneous code word optimization (SimCO)
Year: 2019 PMID: 31018597 PMCID: PMC6514997 DOI: 10.3390/s19081918
Source DB: PubMed Journal: Sensors (Basel) ISSN: 1424-8220 Impact factor: 3.576
Figure 1Algorithm performance in a noiseless case. (a) PSNR vs. iterations with comparison to DLMRI for a brain image; (b) HFEN vs. iterations with comparison to DLMRI for a brain image; (c) PSNR vs. iterations with comparison to DLMRI for a phantom image; (d) HFEN vs. iterations with comparison to DLMRI for a phantom image.
Figure 2Images recovery for noiseless case. (a) Recovered MR image of brain by SiFo; (b) Recovered MR image of brain by DLMRI; (c) Recovered MR image of phantom by SiFo; (d) Recovered MR image of phantom by DLMRI; (e) Reconstruction brain image with zero filling; (f) Reference MR image for brain; (g) k-space sampling mask with 10 fold.
Figure 3Algorithms performance for a noisy case. (a) PSNR vs iterations with comparison to DLMRI for brain image; (b) HFEN vs iterations with comparison to DLMRI for a brain image; (c) PSNR vs iterations with comparison to DLMRI for a phantom image; (d) HFEN vs iterations with comparison to DLMRI for a phantom image.
Figure 4Images recovery in a noisy case. (a) Recovered MR image of a brain by SiFo; (b) Recovered MR image of brain by DLMRI; (c) Recovered MR image of phantom by SiFo; (d) Recovered MR image of a phantom by DLMRI; (e) sampling mask in k-space with 10 fold; (f) Reference MR image of a brain.
Performance parameter of Algorithm with noisy case for Brain Image with Radial sampling.
| Parameters | DLMRI | SiFo | Difference | Improvement (%) |
|---|---|---|---|---|
| Correlation | 0.9965 | 0.9966 | 0.00010 | 0.01 |
| Similarity Index (SSIM) | 0.7974 | 0.8012 | 0.0038 | 0.48 |
| Sharpness | 688.437 | 720.039 | 31.6017 | 4.60 |
Figure 5Algorithms performance in noisy case with cartesian sampling. (a) PSNR vs iterations with comparison to DLMRI for a phantom image (b) HFEN vs iterations with comparison to DLMRI for a phantom image (c) Cartesian sampling scheme with 4 fold. (d) Recovered image.
Figure 6Algorithms performance of SiFo vs DLMRI in a noisy case with radial sampling mask. (a) PSNR vs iterations for a phantom image; (b) HFEN vs iterations for a phantom image; (c) Recovered MR image of a brain by SiFo; (d) Recovered MR image of a brain by DLMRI; (e) Radial sampling mask in k-space with a 6.1 fold undersampling.
(a)
| Parameters | DLMRI | SiFo | Difference | Improvement (%) |
|---|---|---|---|---|
| Correlation | 0.998 | 0.9981 | 0.00010 | 0.01 |
| Similarity Index (SSIM) | 0.8899 | 0.8935 | 0.0036 | 0.04 |
| Sharpness | 944.1884 | 984.3163 | 40.1279 | 4.25 |
(b)
| Parameters | DLMRI | SiFo | Difference | Improvement (%) |
|---|---|---|---|---|
| Correlation | 0.988 | 0.9896 | 0.0016 | 0.16 |
| Similarity Index (SSIM) | 0.8151 | 0.8492 | 0.0341 | 4.18 |
| Sharpness | 3739 | 4434.4 | 695.4 | 18.6 |
(a)
| Parameters | DLMRI | SiFo | Difference | Improvement (%) |
|---|---|---|---|---|
| Correlation | 0.9975 | 0.9981 | 0.0006 | 0.06 |
| Similarity Index (SSIM) | 0.8282 | 0.8902 | 0.062 | 7.49 |
| Sharpness | 870.9357 | 980.2718 | 109.3361 | 12.5 |
(b)
| Parameters | DLMRI | SiFo | Difference | Improvement (%) |
|---|---|---|---|---|
| Correlation | 0.9876 | 0.9892 | 0.0016 | 0.16 |
| Similarity Index (SSIM) | 0.7514 | 0.7716 | 0.0202 | 2.69 |
| Sharpness | 870.9357 | 4177.1 | 676.9 | 19.3 |