Literature DB >> 31016989

Genomic and Genetic Approaches to Deciphering Acute Respiratory Distress Syndrome Risk and Mortality.

Heather Lynn1,2, Xiaoguang Sun2, Nancy Casanova2, Manuel Gonzales-Garay2, Christian Bime2, Joe G N Garcia2.   

Abstract

Significance: Acute respiratory distress syndrome (ARDS) is a severe, highly heterogeneous critical illness with staggering mortality that is influenced by environmental factors, such as mechanical ventilation, and genetic factors. Significant unmet needs in ARDS are addressing the paucity of validated predictive biomarkers for ARDS risk and susceptibility that hamper the conduct of successful clinical trials in ARDS and the complete absence of novel disease-modifying therapeutic strategies. Recent Advances: The current ARDS definition relies on clinical characteristics that fail to capture the diversity of disease pathology, severity, and mortality risk. We undertook a comprehensive survey of the available ARDS literature to identify genes and genetic variants (candidate gene and limited genome-wide association study approaches) implicated in susceptibility to developing ARDS in hopes of uncovering novel biomarkers for ARDS risk and mortality and potentially novel therapeutic targets in ARDS. We further attempted to address the well-known health disparities that exist in susceptibility to and mortality from ARDS. Critical Issues: Bioinformatic analyses identified 201 ARDS candidate genes with pathway analysis indicating a strong predominance in key evolutionarily conserved inflammatory pathways, including reactive oxygen species, innate immunity-related inflammation, and endothelial vascular signaling pathways. Future Directions: Future studies employing a system biology approach that combines clinical characteristics, genomics, transcriptomics, and proteomics may allow for a better definition of biologically relevant pathways and genotype-phenotype connections and result in improved strategies for the sub-phenotyping of diverse ARDS patients via molecular signatures. These efforts should facilitate the potential for successful clinical trials in ARDS and yield a better fundamental understanding of ARDS pathobiology.

Entities:  

Keywords:  ARDS mortality; acute respiratory distress syndrome (ARDS); candidate gene studies; genome-wide association studies (GWAS); inflammation; pathway analysis; reactive oxygen species (ROS)

Year:  2019        PMID: 31016989      PMCID: PMC6939590          DOI: 10.1089/ars.2018.7701

Source DB:  PubMed          Journal:  Antioxid Redox Signal        ISSN: 1523-0864            Impact factor:   8.401


  203 in total

1.  Predictive value of plasma biomarkers for mortality and organ failure development in patients with acute respiratory distress syndrome.

Authors:  Rodrigo Cartin-Ceba; Rolf D Hubmayr; Rui Qin; Steve Peters; Rogier M Determann; Marcus J Schultz; Ognjen Gajic
Journal:  J Crit Care       Date:  2014-09-06       Impact factor: 3.425

2.  Polymorphisms in key pulmonary inflammatory pathways and the development of acute respiratory distress syndrome.

Authors:  Samuel M Brown; Colin K Grissom; Matthew T Rondina; John R Hoidal; Mary Beth Scholand; Roger K Wolff; Alan H Morris; Robert Paine
Journal:  Exp Lung Res       Date:  2014-12-16       Impact factor: 2.459

3.  Distinct and replicable genetic risk factors for acute respiratory distress syndrome of pulmonary or extrapulmonary origin.

Authors:  Paula Tejera; Nuala J Meyer; Feng Chen; Rui Feng; Yang Zhao; D Shane O'Mahony; Lin Li; Chau-Chyun Sheu; Rihong Zhai; Zhaoxi Wang; Li Su; Ed Bajwa; Amy M Ahasic; Peter F Clardy; Michelle N Gong; Angela J Frank; Paul N Lanken; B Taylor Thompson; Jason D Christie; Mark M Wurfel; Grant E O'Keefe; David C Christiani
Journal:  J Med Genet       Date:  2012-10-09       Impact factor: 6.318

4.  Genetic polymorphisms of peptidase inhibitor 3 (elafin) are associated with acute respiratory distress syndrome.

Authors:  Paula Tejera; Zhaoxi Wang; Rihong Zhai; Li Su; Chau-Chyun Sheu; Deanne M Taylor; Feng Chen; Michelle N Gong; B Taylor Thompson; David C Christiani
Journal:  Am J Respir Cell Mol Biol       Date:  2009-02-27       Impact factor: 6.914

5.  Genome-Wide Association Study in African Americans with Acute Respiratory Distress Syndrome Identifies the Selectin P Ligand Gene as a Risk Factor.

Authors:  Christian Bime; Nima Pouladi; Saad Sammani; Ken Batai; Nancy Casanova; Tong Zhou; Carrie L Kempf; Xiaoguang Sun; Sara M Camp; Ting Wang; Rick A Kittles; Yves A Lussier; Tiffanie K Jones; John P Reilly; Nuala J Meyer; Jason D Christie; Jason H Karnes; Manuel Gonzalez-Garay; David C Christiani; Charles R Yates; Mark M Wurfel; Gianfranco U Meduri; Joe G N Garcia
Journal:  Am J Respir Crit Care Med       Date:  2018-06-01       Impact factor: 30.528

6.  Genome-wide association study of survival from sepsis due to pneumonia: an observational cohort study.

Authors:  Anna Rautanen; Tara C Mills; Anthony C Gordon; Paula Hutton; Michael Steffens; Rosamond Nuamah; Jean-Daniel Chiche; Tom Parks; Stephen J Chapman; Emma E Davenport; Katherine S Elliott; Julian Bion; Peter Lichtner; Thomas Meitinger; Thomas F Wienker; Mark J Caulfield; Charles Mein; Frank Bloos; Ilona Bobek; Paolo Cotogni; Vladimir Sramek; Silver Sarapuu; Makbule Kobilay; V Marco Ranieri; Jordi Rello; Gonzalo Sirgo; Yoram G Weiss; Stefan Russwurm; E Marion Schneider; Konrad Reinhart; Paul A H Holloway; Julian C Knight; Chris S Garrard; James A Russell; Keith R Walley; Frank Stüber; Adrian V S Hill; Charles J Hinds
Journal:  Lancet Respir Med       Date:  2014-12-18       Impact factor: 30.700

7.  Structure-Function Analysis of the Non-Muscle Myosin Light Chain Kinase (nmMLCK) Isoform by NMR Spectroscopy and Molecular Modeling: Influence of MYLK Variants.

Authors:  Kui Shen; Benjamin Ramirez; Brandon Mapes; Grace R Shen; Vijay Gokhale; Mary E Brown; Bernard Santarsiero; Yoshitaka Ishii; Steven M Dudek; Ting Wang; Joe G N Garcia
Journal:  PLoS One       Date:  2015-06-25       Impact factor: 3.240

8.  Receptor for advanced glycation end-products and ARDS prediction: a multicentre observational study.

Authors:  Matthieu Jabaudon; Pauline Berthelin; Thibaut Pranal; Laurence Roszyk; Thomas Godet; Jean-Sébastien Faure; Russell Chabanne; Nathanael Eisenmann; Alexandre Lautrette; Corinne Belville; Raiko Blondonnet; Sophie Cayot; Thierry Gillart; Julien Pascal; Yvan Skrzypczak; Bertrand Souweine; Loic Blanchon; Vincent Sapin; Bruno Pereira; Jean-Michel Constantin
Journal:  Sci Rep       Date:  2018-02-08       Impact factor: 4.379

9.  Inflammation and immune-related candidate gene associations with acute lung injury susceptibility and severity: a validation study.

Authors:  D Shane O'Mahony; Bradford J Glavan; Tarah D Holden; Christie Fong; R Anthony Black; Gail Rona; Paula Tejera; David C Christiani; Mark M Wurfel
Journal:  PLoS One       Date:  2012-12-14       Impact factor: 3.240

10.  Adiponectin gene polymorphisms and acute respiratory distress syndrome susceptibility and mortality.

Authors:  Amy M Ahasic; Yang Zhao; Li Su; Chau-Chyun Sheu; B Taylor Thompson; David C Christiani
Journal:  PLoS One       Date:  2014-02-19       Impact factor: 3.240

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  14 in total

Review 1.  Mechanistic Understanding of Lung Inflammation: Recent Advances and Emerging Techniques.

Authors:  Chrysi Keskinidou; Alice G Vassiliou; Ioanna Dimopoulou; Anastasia Kotanidou; Stylianos E Orfanos
Journal:  J Inflamm Res       Date:  2022-06-15

2.  A cortactin CTTN coding SNP contributes to lung vascular permeability and inflammatory disease severity in African descent subjects.

Authors:  Patrick Belvitch; Nancy Casanova; Xiaoguang Sun; Sara M Camp; Saad Sammani; Mary E Brown; Joseph Mascarhenas; Heather Lynn; Djanybek Adyshev; Jessica Siegler; Ankit Desai; Laleh Seyed-Saadat; Alicia Rizzo; Christian Bime; Gajendra S Shekhawat; Vinayak P Dravid; John P Reilly; Tiffanie K Jones; Rui Feng; Eleftheria Letsiou; Nuala J Meyer; Nathan Ellis; Joe G N Garcia; Steven M Dudek
Journal:  Transl Res       Date:  2022-02-15       Impact factor: 10.171

Review 3.  A dissection of SARS‑CoV2 with clinical implications (Review).

Authors:  Felician Stancioiu; Georgios Z Papadakis; Stelios Kteniadakis; Boris Nikovaevich Izotov; Michael D Coleman; Demetrios A Spandidos; Aristidis Tsatsakis
Journal:  Int J Mol Med       Date:  2020-06-10       Impact factor: 4.101

4.  Differential transcriptomics in sarcoidosis lung and lymph node granulomas with comparisons to pathogen-specific granulomas.

Authors:  Nancy G Casanova; Manuel L Gonzalez-Garay; Belinda Sun; Christian Bime; Xiaoguang Sun; Kenneth S Knox; Elliott D Crouser; Nora Sammani; Taylor Gonzales; Bhupinder Natt; Sachin Chaudhary; Yves Lussier; Joe G N Garcia
Journal:  Respir Res       Date:  2020-12-04

Review 5.  Non-targeted proteomics of acute respiratory distress syndrome: clinical and research applications.

Authors:  Xu-Peng Wen; Yue-Zhong Zhang; Qi-Quan Wan
Journal:  Proteome Sci       Date:  2021-03-20       Impact factor: 2.480

6.  Genetic determinants of ammonia-induced acute lung injury in mice.

Authors:  Kiflai Bein; Koustav Ganguly; Timothy M Martin; Vincent J Concel; Kelly A Brant; Y P Peter Di; Swapna Upadhyay; James P Fabisiak; Louis J Vuga; Naftali Kaminski; Emrah Kostem; Eleazar Eskin; Daniel R Prows; Ann-Soo Jang; George D Leikauf
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2020-10-14       Impact factor: 5.464

Review 7.  Dual Role of Hydrogen Peroxide as an Oxidant in Pneumococcal Pneumonia.

Authors:  Mobarak Abu Mraheil; Haroldo A Toque; Luigi La Pietra; Juerg Hamacher; Tenzing Phanthok; Alexander Verin; Joyce Gonzales; Yunchao Su; David Fulton; Douglas C Eaton; Trinad Chakraborty; Rudolf Lucas
Journal:  Antioxid Redox Signal       Date:  2020-08-14       Impact factor: 8.401

8.  Integrative omics provide biological and clinical insights into acute respiratory distress syndrome.

Authors:  Mulong Du; Joe G N Garcia; Jason D Christie; Junyi Xin; Guoshuai Cai; Nuala J Meyer; Zhaozhong Zhu; Qianyu Yuan; Zhengdong Zhang; Li Su; Sipeng Shen; Xuesi Dong; Hui Li; John N Hutchinson; Paula Tejera; Xihong Lin; Meilin Wang; Feng Chen; David C Christiani
Journal:  Intensive Care Med       Date:  2021-05-25       Impact factor: 41.787

9.  Ethnicity and risk of death in patients hospitalised for COVID-19 infection in the UK: an observational cohort study in an urban catchment area.

Authors:  Elizabeth Sapey; Suzy Gallier; Chris Mainey; Peter Nightingale; David McNulty; Hannah Crothers; Felicity Evison; Katharine Reeves; Domenico Pagano; Alastair K Denniston; Krishnarajah Nirantharakumar; Peter Diggle; Simon Ball
Journal:  BMJ Open Respir Res       Date:  2020-09

Review 10.  Using Dictyostelium to Develop Therapeutics for Acute Respiratory Distress Syndrome.

Authors:  Sara A Kirolos; Ramesh Rijal; Kristen M Consalvo; Richard H Gomer
Journal:  Front Cell Dev Biol       Date:  2021-07-19
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